Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   FSA40_RS02540 Genome accession   NZ_CP044493
Coordinates   476393..477433 (+) Length   346 a.a.
NCBI ID   WP_002280349.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 471393..482433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS02510 (FSA40_0494) - 471656..471859 (+) 204 WP_002266333.1 hypothetical protein -
  FSA40_RS02515 (FSA40_0495) - 471900..472145 (+) 246 WP_002267028.1 hypothetical protein -
  FSA40_RS02520 (FSA40_0496) - 472341..472907 (+) 567 WP_002264416.1 TetR/AcrR family transcriptional regulator -
  FSA40_RS02525 (FSA40_0497) - 473028..474803 (+) 1776 WP_002268843.1 oleate hydratase -
  FSA40_RS02530 (FSA40_0499) rsmD 475386..475925 (+) 540 WP_002262037.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FSA40_RS02535 (FSA40_0500) coaD 475915..476415 (+) 501 WP_002264419.1 pantetheine-phosphate adenylyltransferase -
  FSA40_RS02540 (FSA40_0501) sepM 476393..477433 (+) 1041 WP_002280349.1 S16 family serine protease SepM Regulator
  FSA40_RS02545 (FSA40_0502) - 477506..478837 (+) 1332 WP_002280348.1 metallophosphoesterase -
  FSA40_RS02550 (FSA40_0503) - 478834..479382 (+) 549 WP_002268848.1 YutD-like domain-containing protein -
  FSA40_RS02555 (FSA40_0504) rlmN 479379..480464 (+) 1086 WP_002268849.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FSA40_RS02560 (FSA40_0505) - 480464..481000 (+) 537 WP_002262043.1 VanZ family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37964.96 Da        Isoelectric Point: 10.1655

>NTDB_id=390357 FSA40_RS02540 WP_002280349.1 476393..477433(+) (sepM) [Streptococcus mutans strain MD]
MKTNKKFKWWLISGISLILLLMVFFFPLPYYLEMPGGAYDIRSVVTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYKALSLAHKKASFNYMGVYVLQVSKNSTFKGVLNIADTVTGVNDK
TFHSSKELIKYVSGLKLGSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVTSDDKIEFSTNGIGGPSAGLMF
TLDIYDQLVKEDLRKGRIIAGTGTIGEDGSVGDIGGADMKVAAADRINADIFFVPNNPVSKAILKKNPKALTNYQEAKQA
AKKLGTKMKIVPVKNVQEAIDYLRKH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=390357 FSA40_RS02540 WP_002280349.1 476393..477433(+) (sepM) [Streptococcus mutans strain MD]
GTGAAAACAAACAAAAAATTTAAATGGTGGCTAATCAGCGGTATCAGTCTTATTTTGCTTTTAATGGTATTCTTTTTTCC
TCTTCCTTACTATTTAGAAATGCCCGGCGGAGCCTATGATATTCGTTCTGTTGTGACGGTTAATCATAAAGAAGATAAAG
AGAAGGGATCTTATAATTTTGTAGCTGTCTCTCTTAGTAAGGCAACCCCCATACAAGTCCTCTATGCTTGGCTGACCCCT
TTTACAGAAATTACCAGTGCCAAGGAAACAACTGGTGGTGTTAGTGATGCGGATTATATGAGGATTAATCAGTTTTATAT
GGAAACCTCACAAAATGGAGCTATCTATAAAGCTCTTTCTTTAGCTCATAAAAAGGCAAGCTTTAATTATATGGGTGTTT
ATGTTTTGCAGGTTAGTAAGAATTCAACATTCAAGGGTGTTTTAAATATTGCTGATACTGTAACAGGCGTTAATGACAAG
ACCTTTCATAGTTCAAAAGAATTGATTAAATATGTGTCTGGACTGAAATTAGGCAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCCAAGGGCAAAGTTATTAAATTGTCAAATGGCAAAAATGGTATTGGCATTGGCTTGGTTG
ATCATACCAAGGTCACTTCTGATGATAAAATCGAATTTAGCACAAATGGTATTGGAGGGCCAAGTGCCGGTCTCATGTTT
ACCCTTGATATTTACGATCAACTAGTGAAAGAGGACTTACGTAAGGGTCGTATTATTGCAGGTACTGGTACTATTGGAGA
AGACGGGTCTGTTGGGGATATTGGCGGTGCTGATATGAAAGTGGCAGCAGCAGATAGGATTAATGCAGATATCTTTTTTG
TTCCCAATAATCCTGTAAGTAAGGCAATTTTGAAAAAAAATCCCAAAGCTCTCACTAATTATCAAGAAGCTAAGCAGGCT
GCAAAAAAATTAGGCACTAAGATGAAGATTGTCCCTGTTAAAAATGTGCAGGAGGCTATTGATTACCTAAGAAAACACTA
A

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

99.422

100

0.994

Multiple sequence alignment