Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FSA40_RS01585 Genome accession   NZ_CP044493
Coordinates   293288..294688 (+) Length   466 a.a.
NCBI ID   WP_018110178.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 288288..299688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS01555 (FSA40_0306) - 288926..289462 (+) 537 WP_151416178.1 5-formyltetrahydrofolate cyclo-ligase -
  FSA40_RS01560 (FSA40_0307) - 289449..290120 (+) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  FSA40_RS01565 (FSA40_0308) galU 290142..291062 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FSA40_RS01570 (FSA40_0309) - 291064..292083 (-) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FSA40_RS01575 (FSA40_0310) - 292407..292850 (+) 444 WP_002265011.1 dUTP diphosphatase -
  FSA40_RS01580 (FSA40_0311) - 292860..293330 (+) 471 WP_002268864.1 isochorismatase family cysteine hydrolase -
  FSA40_RS01585 (FSA40_0312) radA 293288..294688 (+) 1401 WP_018110178.1 DNA repair protein RadA Machinery gene
  FSA40_RS01590 (FSA40_0313) - 294778..295272 (+) 495 WP_002280285.1 carbonic anhydrase -
  FSA40_RS01595 (FSA40_0314) - 295461..296174 (+) 714 WP_151416179.1 TIGR00266 family protein -
  FSA40_RS01600 (FSA40_0315) gltX 296458..297915 (+) 1458 WP_002262517.1 glutamate--tRNA ligase -
  FSA40_RS01605 (FSA40_0316) - 298031..298555 (+) 525 WP_002262516.1 transcription repressor NadR -
  FSA40_RS01610 (FSA40_0317) - 298622..299170 (+) 549 WP_002262515.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51105.64 Da        Isoelectric Point: 7.1359

>NTDB_id=390349 FSA40_RS01585 WP_018110178.1 293288..294688(+) (radA) [Streptococcus mutans strain MD]
MADCWNSNERRIAIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=390349 FSA40_RS01585 WP_018110178.1 293288..294688(+) (radA) [Streptococcus mutans strain MD]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTGCCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603

Multiple sequence alignment