Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   FSA40_RS01400 Genome accession   NZ_CP044493
Coordinates   257683..258585 (+) Length   300 a.a.
NCBI ID   WP_002266018.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 252683..263585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS01370 (FSA40_0274) - 252724..253002 (+) 279 WP_002264456.1 hypothetical protein -
  FSA40_RS01380 (FSA40_0275) - 254082..254300 (+) 219 WP_151416475.1 Blp family class II bacteriocin -
  FSA40_RS01385 (FSA40_0276) - 254325..254732 (+) 408 WP_002280431.1 hypothetical protein -
  FSA40_RS01395 (FSA40_0278) comA/nlmT 255387..257669 (+) 2283 WP_002263523.1 peptide cleavage/export ABC transporter Regulator
  FSA40_RS01400 (FSA40_0279) comB/nlmE 257683..258585 (+) 903 WP_002266018.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  FSA40_RS01405 (FSA40_0280) - 258958..260622 (+) 1665 WP_151416173.1 transcription antiterminator -
  FSA40_RS01410 (FSA40_0281) ulaG 261201..262292 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34144.55 Da        Isoelectric Point: 10.4515

>NTDB_id=390348 FSA40_RS01400 WP_002266018.1 257683..258585(+) (comB/nlmE) [Streptococcus mutans strain MD]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHRKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=390348 FSA40_RS01400 WP_002266018.1 257683..258585(+) (comB/nlmE) [Streptococcus mutans strain MD]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCCAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCGAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

99.667

100

0.997

Multiple sequence alignment