Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   FSA31_RS01390 Genome accession   NZ_CP044492
Coordinates   291384..292286 (+) Length   300 a.a.
NCBI ID   WP_002266018.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 286384..297286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS01360 (FSA31_0274) - 286424..286702 (+) 279 WP_002276204.1 hypothetical protein -
  FSA31_RS01370 (FSA31_0276) - 287783..288001 (+) 219 WP_014678241.1 Blp family class II bacteriocin -
  FSA31_RS01375 (FSA31_0277) - 288026..288433 (+) 408 WP_002284942.1 hypothetical protein -
  FSA31_RS01385 (FSA31_0279) comA/nlmT 289088..291370 (+) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  FSA31_RS01390 (FSA31_0280) comB/nlmE 291384..292286 (+) 903 WP_002266018.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  FSA31_RS01395 (FSA31_0281) - 292646..294310 (+) 1665 WP_002284878.1 transcription antiterminator -
  FSA31_RS01400 (FSA31_0282) - 294848..296323 (+) 1476 WP_002282261.1 PRD domain-containing protein -
  FSA31_RS01405 (FSA31_0283) - 296313..296735 (+) 423 WP_002284877.1 PTS sugar transporter subunit IIA -
  FSA31_RS01410 (FSA31_0284) - 296752..297204 (+) 453 WP_002271244.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34144.55 Da        Isoelectric Point: 10.4515

>NTDB_id=390277 FSA31_RS01390 WP_002266018.1 291384..292286(+) (comB/nlmE) [Streptococcus mutans strain T8]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHRKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=390277 FSA31_RS01390 WP_002266018.1 291384..292286(+) (comB/nlmE) [Streptococcus mutans strain T8]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAGTCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCGAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTGAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTTACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

99.667

100

0.997

Multiple sequence alignment