Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FSC11_RS13580 Genome accession   NZ_CP044483
Coordinates   2848892..2849218 (-) Length   108 a.a.
NCBI ID   WP_026056799.1    Uniprot ID   A0AAE7BXZ8
Organism   Acinetobacter schindleri strain HZE30-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843892..2854218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS13560 (FSC11_13595) - 2844089..2844742 (-) 654 WP_163167426.1 FHA domain-containing protein -
  FSC11_RS13565 (FSC11_13600) gspD 2844807..2847059 (-) 2253 WP_163167428.1 type II secretion system secretin GspD -
  FSC11_RS13570 (FSC11_13605) - 2847098..2847964 (-) 867 WP_163167430.1 type II secretion system protein N -
  FSC11_RS13575 (FSC11_13610) gspN 2847964..2848707 (-) 744 WP_004890585.1 type II secretion system protein N -
  FSC11_RS13580 (FSC11_13615) hns 2848892..2849218 (-) 327 WP_026056799.1 H-NS family nucleoid-associated regulatory protein Regulator
  FSC11_RS13585 (FSC11_13620) - 2849361..2849789 (-) 429 WP_163167432.1 acyl-CoA thioesterase -
  FSC11_RS13590 (FSC11_13625) - 2849800..2850993 (-) 1194 WP_163167434.1 heme biosynthesis protein HemY -
  FSC11_RS13595 (FSC11_13630) - 2851000..2851827 (-) 828 WP_163167437.1 hypothetical protein -
  FSC11_RS13600 (FSC11_13635) - 2851824..2852603 (-) 780 WP_163167439.1 uroporphyrinogen-III synthase -
  FSC11_RS13605 (FSC11_13640) hemC 2852609..2853529 (-) 921 WP_163167441.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.07 Da        Isoelectric Point: 5.3249

>NTDB_id=390267 FSC11_RS13580 WP_026056799.1 2848892..2849218(-) (hns) [Acinetobacter schindleri strain HZE30-1]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=390267 FSC11_RS13580 WP_026056799.1 2848892..2849218(-) (hns) [Acinetobacter schindleri strain HZE30-1]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAGCATTGCAGAAAAAGTAGGTATGAGCATTGAACAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACCTGGACAGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCAGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment