Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FSC12_RS09895 Genome accession   NZ_CP044474
Coordinates   2068286..2069149 (+) Length   287 a.a.
NCBI ID   WP_205682699.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2063286..2074149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS09870 (FSC12_09960) - 2063569..2064771 (+) 1203 WP_163169170.1 CsgG/HfaB family protein -
  FSC12_RS09875 (FSC12_09965) - 2064855..2065532 (+) 678 WP_163169171.1 hypothetical protein -
  FSC12_RS09880 (FSC12_09970) - 2065794..2066369 (-) 576 WP_004809732.1 xanthine phosphoribosyltransferase -
  FSC12_RS09885 (FSC12_09975) - 2066460..2067173 (-) 714 WP_163169172.1 DUF3108 domain-containing protein -
  FSC12_RS09890 (FSC12_09980) - 2067329..2068018 (-) 690 WP_163169173.1 hypothetical protein -
  FSC12_RS09895 (FSC12_09985) tonB2 2068286..2069149 (+) 864 WP_205682699.1 energy transducer TonB Machinery gene
  FSC12_RS09900 (FSC12_09990) - 2069146..2069445 (-) 300 WP_004896079.1 antibiotic biosynthesis monooxygenase -
  FSC12_RS09905 (FSC12_09995) - 2069477..2069875 (-) 399 WP_163169175.1 hypothetical protein -
  FSC12_RS09910 (FSC12_10000) ybeY 2070019..2070501 (-) 483 WP_004809720.1 rRNA maturation RNase YbeY -
  FSC12_RS09915 (FSC12_10005) - 2070524..2071600 (-) 1077 WP_048881843.1 PhoH family protein -
  FSC12_RS09920 (FSC12_10010) miaB 2071640..2073097 (-) 1458 WP_004809718.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32781.36 Da        Isoelectric Point: 9.2497

>NTDB_id=390220 FSC12_RS09895 WP_205682699.1 2068286..2069149(+) (tonB2) [Acinetobacter schindleri strain HZE33-1]
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRISNDKIEHADFLAQTDQQGSGQFREAHRMS
SDVPLPMPDQAAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENHRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDANMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=390220 FSC12_RS09895 WP_205682699.1 2068286..2069149(+) (tonB2) [Acinetobacter schindleri strain HZE33-1]
ATGCCCTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTCAGCCTGCGCATCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGTTCCATTGCCGATGCCGGATCAGGCAGCTGGAAAAGAAGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAGGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCATCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGACGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGCTTGGCGG
GTGACGTCCGCTTAATGGTGATTCTGAATCAAAATGGGGGTATTCGAGCGATTCGATTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAACATGAAAGATATTTC
AGAATTACGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.786

97.561

0.7

Multiple sequence alignment