Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FSC12_RS08445 Genome accession   NZ_CP044474
Coordinates   1784874..1786028 (-) Length   384 a.a.
NCBI ID   WP_163169012.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779874..1791028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08420 (FSC12_08490) - 1780361..1780741 (-) 381 WP_163169010.1 RcnB family protein -
  FSC12_RS08425 (FSC12_08495) - 1780956..1781501 (-) 546 Protein_1646 glutathione peroxidase -
  FSC12_RS08430 (FSC12_08500) - 1781725..1782636 (+) 912 WP_005220263.1 DMT family transporter -
  FSC12_RS08435 (FSC12_08510) - 1783032..1783601 (-) 570 WP_005220259.1 L-threonylcarbamoyladenylate synthase -
  FSC12_RS08440 (FSC12_08515) dprA 1783642..1784781 (-) 1140 WP_163169011.1 DNA-processing protein DprA Machinery gene
  FSC12_RS08445 (FSC12_08520) tsaP 1784874..1786028 (-) 1155 WP_163169012.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC12_RS08450 (FSC12_08525) def 1786149..1786679 (+) 531 WP_163169013.1 peptide deformylase -
  FSC12_RS08455 (FSC12_08530) - 1786772..1787191 (+) 420 WP_163169014.1 DUF2946 family protein -
  FSC12_RS08460 (FSC12_08535) - 1787263..1789284 (+) 2022 WP_163169015.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42158.46 Da        Isoelectric Point: 9.0719

>NTDB_id=390205 FSC12_RS08445 WP_163169012.1 1784874..1786028(-) (tsaP) [Acinetobacter schindleri strain HZE33-1]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTIHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYVRGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=390205 FSC12_RS08445 WP_163169012.1 1784874..1786028(-) (tsaP) [Acinetobacter schindleri strain HZE33-1]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAACTATACATGCAGCACCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAAAATCCACACTGGATTTTTCCAGGTGACCGTCTGCTGATGTGCGATTA
CCAGGGCCGCCCAATCATTGGTAAAGATGAAGGCGATGGCTGTACCGGTATCATCAATCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTACGTATTGAATCGCTCAACAATACCATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGTACGTGGGAATGGCCTGGAAGTAGGTCAACGTTATGCGGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCCAATGGTAAAAAATACACCGCTGCCCTAGAACTGCAACAGGTTGCTTCTGGTATCGCAGTCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGACAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGCGGCATAGCACATGGTGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAACGTGTACAGCTCCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTTCTAGACAGTGAATTGCCAATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682

Multiple sequence alignment