Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FSC12_RS06240 Genome accession   NZ_CP044474
Coordinates   1324537..1324863 (-) Length   108 a.a.
NCBI ID   WP_026056799.1    Uniprot ID   A0AAE7BXZ8
Organism   Acinetobacter schindleri strain HZE33-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319537..1329863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS06220 (FSC12_06270) - 1319734..1320387 (-) 654 WP_163168789.1 FHA domain-containing protein -
  FSC12_RS06225 (FSC12_06275) gspD 1320452..1322704 (-) 2253 WP_163168790.1 type II secretion system secretin GspD -
  FSC12_RS06230 (FSC12_06280) - 1322743..1323609 (-) 867 WP_163168791.1 type II secretion system protein N -
  FSC12_RS06235 (FSC12_06285) gspN 1323609..1324352 (-) 744 WP_004890585.1 type II secretion system protein N -
  FSC12_RS06240 (FSC12_06290) hns 1324537..1324863 (-) 327 WP_026056799.1 H-NS family nucleoid-associated regulatory protein Regulator
  FSC12_RS06245 (FSC12_06295) - 1325128..1325556 (-) 429 WP_076752946.1 thioesterase family protein -
  FSC12_RS06250 (FSC12_06300) - 1325567..1326760 (-) 1194 WP_163168792.1 heme biosynthesis protein HemY -
  FSC12_RS06255 (FSC12_06305) - 1326767..1327594 (-) 828 WP_163168793.1 hypothetical protein -
  FSC12_RS06260 (FSC12_06310) - 1327591..1328370 (-) 780 WP_163168794.1 uroporphyrinogen-III synthase -
  FSC12_RS06265 (FSC12_06315) hemC 1328376..1329296 (-) 921 WP_163168795.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.07 Da        Isoelectric Point: 5.3249

>NTDB_id=390200 FSC12_RS06240 WP_026056799.1 1324537..1324863(-) (hns) [Acinetobacter schindleri strain HZE33-1]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=390200 FSC12_RS06240 WP_026056799.1 1324537..1324863(-) (hns) [Acinetobacter schindleri strain HZE33-1]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAGCATTGCAGAAAAAGTAGGTATGAGCATTGAACAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACCTGGACAGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCAGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment