Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FSC12_RS05940 Genome accession   NZ_CP044474
Coordinates   1251649..1253886 (+) Length   745 a.a.
NCBI ID   WP_163168764.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246649..1258886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS05920 (FSC12_05960) lnt 1247365..1248927 (+) 1563 WP_163168761.1 apolipoprotein N-acyltransferase -
  FSC12_RS05925 (FSC12_05965) - 1249129..1249464 (-) 336 WP_163168762.1 hypothetical protein -
  FSC12_RS05930 (FSC12_05970) gspG 1249749..1250216 (-) 468 WP_320077507.1 type II secretion system major pseudopilin GspG -
  FSC12_RS05935 (FSC12_05975) gspF 1250308..1251513 (-) 1206 WP_163168763.1 type II secretion system inner membrane protein GspF -
  FSC12_RS05940 (FSC12_05980) priA 1251649..1253886 (+) 2238 WP_163168764.1 primosomal protein N' Machinery gene
  FSC12_RS05945 (FSC12_05985) - 1253928..1255781 (+) 1854 WP_163168765.1 cation:proton antiporter -
  FSC12_RS05950 (FSC12_05990) hslO 1255832..1256707 (+) 876 WP_163168766.1 Hsp33 family molecular chaperone HslO -
  FSC12_RS05955 (FSC12_05995) - 1257168..1257632 (+) 465 WP_163168767.1 DUF2147 domain-containing protein -
  FSC12_RS05960 (FSC12_06000) - 1257827..1258288 (+) 462 WP_004813478.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84488.32 Da        Isoelectric Point: 8.3651

>NTDB_id=390199 FSC12_RS05940 WP_163168764.1 1251649..1253886(+) (priA) [Acinetobacter schindleri strain HZE33-1]
MPHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAEVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVDTTETVLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTINRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTSMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHRQPYQHLHCHH
CGTLHRMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=390199 FSC12_RS05940 WP_163168764.1 1251649..1253886(+) (priA) [Acinetobacter schindleri strain HZE33-1]
ATGCCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTGAGGTTGGTGCGCGCGTGGCGGTGTCTTTCG
GGCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTGCCGCCAGACACTCCGCTAGATTCCAGTTTTAAACTTAAAGAG
ATTACTGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACCTTATTACGTCAGGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTGCGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGATACCACTGAAACTGTACTGAACCTGGCAGGGATCGAAACAGCCACCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGTGTGCTGGAAGCACAGGATTTCAGCCCGCAGCCTGTTCAACTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAGCAGGTGCTGAAATTTAAAAATAAATATCAGGCTTTCTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTGACGCCACAAACCATTAACCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGCTGGGTACCCGTTCTGCC
ATTTATACCTCGATGCCCAATCTAGGATTGATCATCCTGGATGAGGAACATGATCTGTCTTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GTATCGATACCTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTCAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTCTAGATTTAAAGGTGGCACAGAAACAGCATGGCATCAGCCTGCATCTGATTCAGGAAATACGCAA
ACGTCTGGAAAAAAAGGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCGTCAGCCATATCAACATTTACATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTCCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAGTCATTCGGGTAGATCGTGATTCTACCAGTCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAACCGGCAATTTTGCTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTAGACTTCCGTGCCACCGA
ACGCACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCACAAGGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAATTACCGGGCTTTTGCCAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTGGAGATCTGGGGACCTATTCCCGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATGTCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAGCCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAGCTGAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.596

99.06

0.699

Multiple sequence alignment