Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FSC10_RS13825 Genome accession   NZ_CP044463
Coordinates   2884827..2885153 (-) Length   108 a.a.
NCBI ID   WP_026056799.1    Uniprot ID   A0AAE7BXZ8
Organism   Acinetobacter schindleri strain HZE23-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879827..2890153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS13805 (FSC10_13855) - 2880024..2880677 (-) 654 WP_163172363.1 FHA domain-containing protein -
  FSC10_RS13810 (FSC10_13860) gspD 2880742..2882994 (-) 2253 WP_163172365.1 type II secretion system secretin GspD -
  FSC10_RS13815 (FSC10_13865) - 2883033..2883899 (-) 867 WP_163172367.1 type II secretion system protein N -
  FSC10_RS13820 (FSC10_13870) gspN 2883899..2884642 (-) 744 WP_004890585.1 type II secretion system protein N -
  FSC10_RS13825 (FSC10_13875) hns 2884827..2885153 (-) 327 WP_026056799.1 H-NS family nucleoid-associated regulatory protein Regulator
  FSC10_RS13830 (FSC10_13880) - 2885296..2885724 (-) 429 WP_163172369.1 acyl-CoA thioesterase -
  FSC10_RS13835 (FSC10_13885) - 2885735..2886928 (-) 1194 WP_163172371.1 heme biosynthesis protein HemY -
  FSC10_RS13840 (FSC10_13890) - 2886935..2887762 (-) 828 WP_163172373.1 hypothetical protein -
  FSC10_RS13845 (FSC10_13895) - 2887759..2888538 (-) 780 WP_163172375.1 uroporphyrinogen-III synthase -
  FSC10_RS13850 (FSC10_13900) hemC 2888544..2889464 (-) 921 WP_048882234.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.07 Da        Isoelectric Point: 5.3249

>NTDB_id=390184 FSC10_RS13825 WP_026056799.1 2884827..2885153(-) (hns) [Acinetobacter schindleri strain HZE23-1]
MMPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMSIEQLLEFGASKRKKSSRKTVEPRYRSKANPE
ETWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=390184 FSC10_RS13825 WP_026056799.1 2884827..2885153(-) (hns) [Acinetobacter schindleri strain HZE23-1]
GTGATGCCAGACATTACGAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATTGCGTCTAA
AAAAGACCAGGAAATCGAAGATGCTTATAATCAGGTATTAAGCATTGCAGAAAAAGTAGGTATGAGCATTGAGCAGTTGC
TCGAGTTCGGTGCCTCTAAGCGCAAGAAATCATCTCGCAAGACTGTAGAACCACGTTACCGCAGTAAAGCAAATCCGGAA
GAAACTTGGACAGGTCGTGGTAAACAGCCACGCTGGCTGGTTGCAGAACTGGAACAAGGTGCCAAGCTGGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment