Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HJD23_RS37490 Genome accession   NZ_CP053109
Coordinates   8240839..8241063 (-) Length   74 a.a.
NCBI ID   WP_171110578.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8235839..8246063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS37445 - 8236601..8236774 (-) 174 WP_171110585.1 hypothetical protein -
  HJD23_RS37450 - 8236963..8237604 (-) 642 WP_171110584.1 hypothetical protein -
  HJD23_RS37455 - 8237601..8238110 (-) 510 WP_171110583.1 hypothetical protein -
  HJD23_RS37460 - 8238118..8238261 (-) 144 WP_171110582.1 hypothetical protein -
  HJD23_RS37465 - 8238261..8239091 (-) 831 WP_171110581.1 protein transporter Sec31 -
  HJD23_RS37470 - 8239159..8239458 (-) 300 WP_171110580.1 hypothetical protein -
  HJD23_RS44385 - 8239598..8240401 (+) 804 WP_240980899.1 DUF6221 family protein -
  HJD23_RS37485 - 8240645..8240842 (-) 198 WP_171110579.1 hypothetical protein -
  HJD23_RS37490 dinR/lexA 8240839..8241063 (-) 225 WP_171110578.1 hypothetical protein Regulator
  HJD23_RS37495 - 8241109..8241444 (+) 336 WP_171110577.1 DUF6233 domain-containing protein -
  HJD23_RS37500 - 8241441..8242346 (-) 906 WP_171134119.1 Ku protein -
  HJD23_RS37505 - 8242465..8242686 (+) 222 WP_171108620.1 hypothetical protein -
  HJD23_RS37510 - 8242780..8243514 (-) 735 WP_171108622.1 hypothetical protein -
  HJD23_RS37515 - 8243612..8244049 (-) 438 WP_171134120.1 hypothetical protein -
  HJD23_RS37520 - 8244046..8244612 (-) 567 WP_171108625.1 3'-5' exoribonuclease -
  HJD23_RS37525 - 8244740..8244946 (-) 207 WP_171108627.1 hypothetical protein -
  HJD23_RS37530 - 8245053..8245295 (-) 243 WP_171108629.1 hypothetical protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 8241.37 Da        Isoelectric Point: 9.2439

>NTDB_id=390177 HJD23_RS37490 WP_171110578.1 8240839..8241063(-) (dinR/lexA) [Streptomyces sp. Z423-1]
MANHKVEHLTATQERILRCIREHIADQGEAPTVAEIGHQAGLRSRASVHYQLGELETKGAIVREPGRHRGIRLA

Nucleotide


Download         Length: 225 bp        

>NTDB_id=390177 HJD23_RS37490 WP_171110578.1 8240839..8241063(-) (dinR/lexA) [Streptomyces sp. Z423-1]
ATGGCCAACCACAAGGTCGAGCACCTCACCGCCACCCAGGAGCGCATCCTCCGCTGCATCCGCGAGCACATCGCCGACCA
AGGAGAAGCGCCCACAGTGGCAGAGATCGGCCACCAGGCAGGCCTGCGCTCCCGGGCCTCCGTGCACTACCAGCTGGGCG
AACTGGAAACGAAAGGCGCCATCGTGCGCGAGCCCGGCCGACATAGAGGGATCCGACTCGCATGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(7-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.077

87.838

0.378

Multiple sequence alignment