Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FSC10_RS06065 Genome accession   NZ_CP044463
Coordinates   1230918..1231553 (+) Length   211 a.a.
NCBI ID   WP_163171183.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE23-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1225918..1236553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS06030 (FSC10_06055) kdsB 1226099..1226860 (+) 762 WP_163171178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FSC10_RS06035 (FSC10_06060) - 1226875..1227858 (+) 984 WP_163165721.1 DNA polymerase III subunit delta' -
  FSC10_RS06040 (FSC10_06065) - 1227876..1228217 (+) 342 WP_163171179.1 PilZ domain-containing protein -
  FSC10_RS06045 (FSC10_06070) - 1228244..1229017 (+) 774 WP_163171180.1 TatD family hydrolase -
  FSC10_RS06050 (FSC10_06075) - 1229058..1229672 (+) 615 WP_004892793.1 TetR/AcrR family transcriptional regulator -
  FSC10_RS06055 (FSC10_06080) - 1229682..1230239 (+) 558 WP_163171181.1 type II secretion system protein -
  FSC10_RS06060 (FSC10_06085) gspI 1230373..1230921 (+) 549 WP_228722236.1 type II secretion system minor pseudopilin GspI -
  FSC10_RS06065 (FSC10_06090) xcpW 1230918..1231553 (+) 636 WP_163171183.1 type II secretion system protein GspJ Machinery gene
  FSC10_RS06070 (FSC10_06095) gspK 1231563..1232510 (+) 948 WP_163171184.1 type II secretion system minor pseudopilin GspK -
  FSC10_RS06075 (FSC10_06100) - 1232663..1233259 (+) 597 WP_163171185.1 6-pyruvoyl trahydropterin synthase family protein -
  FSC10_RS06080 (FSC10_06105) ung 1233305..1234021 (+) 717 WP_005222516.1 uracil-DNA glycosylase -
  FSC10_RS06085 (FSC10_06110) - 1234018..1235142 (+) 1125 WP_004815595.1 enoyl-CoA hydratase/isomerase family protein -
  FSC10_RS06090 (FSC10_06115) tadA 1235146..1235667 (+) 522 WP_004815596.1 tRNA adenosine(34) deaminase TadA -
  FSC10_RS06095 (FSC10_06120) - 1235719..1236150 (+) 432 WP_004815598.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24074.12 Da        Isoelectric Point: 4.8547

>NTDB_id=390168 FSC10_RS06065 WP_163171183.1 1230918..1231553(+) (xcpW) [Acinetobacter schindleri strain HZE23-1]
MKKNGFTLVELLVAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDTVQTVPLTANVNGDIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKFRNLNQTGRDQPESSILLSDVEQFQITVLNPNEITQWPE
SGLDLNRTENKQLLPKGIKINLTVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390168 FSC10_RS06065 WP_163171183.1 1230918..1231553(+) (xcpW) [Acinetobacter schindleri strain HZE23-1]
ATGAAAAAAAATGGATTTACCCTGGTTGAGCTGCTGGTTGCGATTGCGATCTTTGCTGTATTGTCTGCATTGGGATGGCA
GGTCTTTGATCATATTCGGGTCACGCGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATACGGTGCAAACAGTACCCTTAACCGCAAATGTAAATGGTGATATTCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCGCTGGAACAAGGCATCGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAATTCAGGAACCTGAACCAGACCGGACGCGATCAACCGG
AATCGAGCATATTGCTGAGCGATGTAGAACAGTTTCAAATTACTGTACTGAATCCAAATGAAATCACACAATGGCCGGAA
AGTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGACTGTACAGGGTGT
GCAATATGAATGGTTGTTCAGTCTGCTGAACACAGATTATCTGTCAAATAATACCAATAATATAGGCAGCTCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.247

91.943

0.536

Multiple sequence alignment