Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FSC10_RS02500 Genome accession   NZ_CP044463
Coordinates   493640..494503 (+) Length   287 a.a.
NCBI ID   WP_216073844.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE23-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488640..499503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS02475 (FSC10_02500) - 488927..490129 (+) 1203 WP_163170857.1 CsgG/HfaB family protein -
  FSC10_RS02480 (FSC10_02505) - 490213..490890 (+) 678 WP_163170858.1 hypothetical protein -
  FSC10_RS02485 (FSC10_02510) - 491152..491727 (-) 576 WP_004809732.1 xanthine phosphoribosyltransferase -
  FSC10_RS02490 (FSC10_02515) - 491818..492531 (-) 714 WP_163170859.1 DUF3108 domain-containing protein -
  FSC10_RS02495 (FSC10_02520) - 492683..493372 (-) 690 WP_048881840.1 hypothetical protein -
  FSC10_RS02500 (FSC10_02525) tonB2 493640..494503 (+) 864 WP_216073844.1 energy transducer TonB Machinery gene
  FSC10_RS02505 (FSC10_02530) - 494500..494799 (-) 300 WP_004896079.1 antibiotic biosynthesis monooxygenase family protein -
  FSC10_RS02510 (FSC10_02535) - 494831..495223 (-) 393 WP_163164869.1 hypothetical protein -
  FSC10_RS02515 (FSC10_02540) ybeY 495367..495849 (-) 483 WP_004809720.1 rRNA maturation RNase YbeY -
  FSC10_RS02520 (FSC10_02545) - 495872..496948 (-) 1077 WP_004809719.1 PhoH family protein -
  FSC10_RS02525 (FSC10_02550) miaB 496988..498445 (-) 1458 WP_163164871.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32846.43 Da        Isoelectric Point: 9.2369

>NTDB_id=390164 FSC10_RS02500 WP_216073844.1 493640..494503(+) (tonB2) [Acinetobacter schindleri strain HZE23-1]
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRVSNDKIEHADFLAQTDQQGSGQFREVHRMS
SDAPLPMPDQTAGKEEMLQNSQDMLQQKQDLSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPESARIQRLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAARTSLRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=390164 FSC10_RS02500 WP_216073844.1 493640..494503(+) (tonB2) [Acinetobacter schindleri strain HZE23-1]
ATGCCCTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTCAGCCTGCGCGTCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAAACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGTGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCGGATCAGACAGCTGGAAAAGAAGAAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAAGATTTGAGCTTTGAAGAAAAAGTCCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGATGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTGAATCTGCCCGTATACAGCGCTTGGCGG
GTGACGTCCGCTTAATGGTGATTCTGAATCAAAATGGGGGTATTCGAGCGATTCGATTGTTGGAATCTTCTGGTCATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTCGATGCCAAAATGAAAGATATTTC
AGAATTACGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

70.357

97.561

0.686

Multiple sequence alignment