Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PALPR_RS06260 Genome accession   NC_014734
Coordinates   1503976..1505346 (-) Length   456 a.a.
NCBI ID   WP_013444770.1    Uniprot ID   -
Organism   Paludibacter propionicigenes WB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498976..1510346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALPR_RS06220 (Palpr_1247) - 1499107..1500330 (+) 1224 WP_013444763.1 aminotransferase class V-fold PLP-dependent enzyme -
  PALPR_RS06225 (Palpr_1248) - 1500388..1500816 (+) 429 WP_013444764.1 SufE family protein -
  PALPR_RS06230 (Palpr_1249) ruvC 1500883..1501479 (-) 597 WP_013444765.1 crossover junction endodeoxyribonuclease RuvC -
  PALPR_RS15665 (Palpr_1250) - 1501519..1501830 (-) 312 WP_013444766.1 DUF4286 family protein -
  PALPR_RS06245 (Palpr_1251) - 1502068..1502451 (-) 384 WP_013444767.1 DUF3037 domain-containing protein -
  PALPR_RS06250 (Palpr_1252) - 1502429..1503211 (-) 783 WP_013444768.1 HipA family kinase -
  PALPR_RS06255 (Palpr_1253) tnpA 1503401..1503847 (-) 447 WP_013444769.1 IS200/IS605 family transposase -
  PALPR_RS06260 (Palpr_1254) radA 1503976..1505346 (-) 1371 WP_013444770.1 DNA repair protein RadA Machinery gene
  PALPR_RS06265 (Palpr_1255) - 1505381..1506727 (-) 1347 WP_013444771.1 ATP-binding protein -
  PALPR_RS06270 (Palpr_1256) - 1506942..1508270 (-) 1329 WP_013444772.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50144.10 Da        Isoelectric Point: 7.0612

>NTDB_id=39015 PALPR_RS06260 WP_013444770.1 1503976..1505346(-) (radA) [Paludibacter propionicigenes WB4]
MAKTKSVYVCQNCGVDSPKWIGKCPSCGEWNTYVEEVVSKDNTPKVVMGGLEITKQKPILITEVETSEESRFDTSCNELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQVVLNMKGKRTLYVSGEESVKQLKLRAERLKFENPDCYIVSETSLEQIFVHV
QNIQPDVLIVDSIQTISTEMIESSPGSVSQVRECAAHLLKFSKTTSIPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTSELGIFEMQQSGLREVSNPSELLLSQNHEGLSGVAIASAIEGVRPFLIETQALVSSAAYGTP
QRSSTGFDLRRLNMLLAVLEKRAGFKIAQKDVFLNIAGGIKVNDPAIDLAVISAILSSNVDIAIEKHVCVAGEVGLSGEI
RPINRIEQRILEAEKLGFKKMIIPEYNLKSLNLNKLNIELIQVKKVEEAFRVLFKR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=39015 PALPR_RS06260 WP_013444770.1 1503976..1505346(-) (radA) [Paludibacter propionicigenes WB4]
ATGGCCAAAACTAAATCTGTATATGTTTGTCAAAATTGTGGCGTCGATTCGCCGAAATGGATAGGCAAATGTCCATCGTG
TGGCGAGTGGAACACCTATGTAGAAGAAGTAGTCAGTAAAGACAATACGCCCAAAGTAGTGATGGGCGGACTCGAAATTA
CCAAACAAAAACCTATTCTGATTACAGAAGTGGAAACCTCGGAAGAGAGCCGTTTCGATACCAGTTGCAACGAGTTGAAT
CGGGTGTTGGGCGGCGGATTGGTTCCGGGCTCGCTGGTGCTGATTGGTGGCGAGCCGGGTATCGGCAAGTCTACGCTGGT
GCTACAGGTGGTGCTCAATATGAAAGGAAAACGTACACTCTACGTGTCCGGCGAGGAAAGCGTAAAACAGCTGAAACTCC
GTGCCGAGCGCCTGAAGTTTGAGAATCCCGACTGCTACATTGTCAGCGAAACTTCGCTCGAACAAATCTTTGTACATGTT
CAAAACATTCAGCCCGATGTGCTTATTGTCGATTCCATTCAGACTATTTCTACCGAAATGATAGAGTCGTCGCCCGGGTC
TGTGTCGCAGGTGCGGGAGTGTGCGGCTCATCTTCTCAAATTCAGTAAAACAACTTCCATTCCGGTGTTGCTCATCGGTC
ATATCAACAAAGAAGGCAGCATTGCCGGTCCGAAAGTGTTGGAGCATATCGTGGACACGGTGCTCCAGTTCGAAGGCGAC
CAGCATTATATGTACCGCATCCTGCGTTCCATCAAAAACCGCTTTGGAAGTACGTCCGAACTCGGTATTTTCGAAATGCA
GCAAAGCGGTTTGCGCGAAGTAAGCAATCCGTCGGAACTGCTGCTTTCGCAAAACCACGAGGGATTAAGCGGCGTAGCCA
TTGCTTCGGCTATTGAAGGCGTCCGTCCTTTCCTGATAGAAACGCAGGCGTTGGTCAGCTCAGCGGCTTACGGCACCCCT
CAACGCTCGAGCACTGGCTTTGATCTGCGCCGACTGAACATGTTGCTGGCCGTGCTCGAAAAGCGCGCCGGATTCAAAAT
TGCCCAAAAGGATGTGTTTCTCAACATTGCCGGTGGCATAAAAGTAAACGACCCGGCCATTGACCTGGCGGTTATATCGG
CCATCTTGTCGTCCAACGTGGATATAGCTATCGAAAAGCACGTATGTGTGGCCGGTGAAGTAGGACTTTCAGGTGAAATT
CGCCCCATCAACCGCATAGAACAGCGCATACTCGAAGCCGAAAAGCTTGGATTCAAAAAAATGATTATCCCCGAATACAA
CCTGAAAAGTCTCAACCTCAACAAGCTCAATATCGAACTGATACAGGTAAAGAAAGTGGAAGAGGCGTTCAGGGTGTTGT
TTAAGAGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.286

99.781

0.542
  radA Streptococcus pneumoniae Rx1

50.658

100

0.507
  radA Streptococcus pneumoniae D39

50.658

100

0.507
  radA Streptococcus pneumoniae R6

50.658

100

0.507
  radA Streptococcus pneumoniae TIGR4

50.658

100

0.507
  radA Streptococcus mitis NCTC 12261

50.439

100

0.504
  radA Streptococcus mitis SK321

50.219

100

0.502

Multiple sequence alignment