Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FSC09_RS14050 Genome accession   NZ_CP044455
Coordinates   2893108..2894265 (+) Length   385 a.a.
NCBI ID   WP_016658990.1    Uniprot ID   V2UEN4
Organism   Acinetobacter indicus strain B18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2888108..2899265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS14035 (FSC09_14100) - 2889859..2891877 (-) 2019 WP_163146223.1 TonB-dependent copper receptor -
  FSC09_RS14040 (FSC09_14105) - 2891951..2892373 (-) 423 WP_016658991.1 DUF2946 family protein -
  FSC09_RS14045 (FSC09_14110) def 2892464..2892988 (-) 525 WP_005181462.1 peptide deformylase -
  FSC09_RS14050 (FSC09_14115) tsaP 2893108..2894265 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FSC09_RS14055 (FSC09_14120) dprA 2894282..2895424 (+) 1143 WP_163146224.1 DNA-processing protein DprA Machinery gene
  FSC09_RS14060 (FSC09_14125) - 2895468..2896034 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  FSC09_RS14065 (FSC09_14135) - 2896415..2897326 (-) 912 WP_005181447.1 DMT family transporter -
  FSC09_RS14070 (FSC09_14140) - 2897655..2898197 (+) 543 WP_163146225.1 glutathione peroxidase -
  FSC09_RS14075 (FSC09_14145) - 2898380..2898988 (+) 609 WP_163146337.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42521.54 Da        Isoelectric Point: 8.8330

>NTDB_id=390143 FSC09_RS14050 WP_016658990.1 2893108..2894265(+) (tsaP) [Acinetobacter indicus strain B18]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=390143 FSC09_RS14050 WP_016658990.1 2893108..2894265(+) (tsaP) [Acinetobacter indicus strain B18]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACGGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGCACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTATTGGC
GGCTAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCCGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGACATTACTACCCTGGAACTGACCGACACCTACAATGCCGAAGTGCGTCGTGGTGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCGACCCTGTTCTATCCGACCAATGCCGAACATATTGCAGCGGATGGCCAGGTGGTACGTG
TGATGGGGTCAATTGGGACCGCGGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UEN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment