Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FSC05_RS12495 Genome accession   NZ_CP044450
Coordinates   2608461..2610683 (+) Length   740 a.a.
NCBI ID   WP_163143003.1    Uniprot ID   -
Organism   Acinetobacter indicus strain MMS9-2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2603461..2615683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC05_RS12475 (FSC05_12550) lnt 2604268..2605827 (+) 1560 WP_163142999.1 apolipoprotein N-acyltransferase -
  FSC05_RS12480 (FSC05_12555) - 2606000..2606335 (-) 336 WP_045795389.1 hypothetical protein -
  FSC05_RS12485 (FSC05_12560) gspG 2606615..2607052 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  FSC05_RS12490 (FSC05_12565) gspF 2607104..2608309 (-) 1206 WP_045795388.1 type II secretion system inner membrane protein GspF -
  FSC05_RS12495 (FSC05_12570) priA 2608461..2610683 (+) 2223 WP_163143003.1 primosomal protein N' Machinery gene
  FSC05_RS12500 (FSC05_12575) - 2610734..2612575 (+) 1842 WP_163143006.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  FSC05_RS12505 (FSC05_12580) - 2612626..2613501 (+) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  FSC05_RS12510 (FSC05_12585) - 2613912..2614373 (+) 462 WP_005181860.1 DUF2147 domain-containing protein -
  FSC05_RS12515 (FSC05_12590) - 2614777..2615115 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  FSC05_RS12520 (FSC05_12595) - 2615192..2615461 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84175.27 Da        Isoelectric Point: 8.7896

>NTDB_id=390093 FSC05_RS12495 WP_163143003.1 2608461..2610683(+) (priA) [Acinetobacter indicus strain MMS9-2]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGMGTAKVEENLQQLFPDYDVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=390093 FSC05_RS12495 WP_163143003.1 2608461..2610683(+) (priA) [Acinetobacter indicus strain MMS9-2]
ATGCCAAATTCGCCCGTCCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTTCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTGCTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCTTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTACTG
CGATCTGGAGCAGCAGGATTTTAGCCCAGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAAATCATGCAGGAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACCGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
TGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCAGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTAGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCCAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAGAAACGCCTGCAGAAAAA
AGAACAGGTGCTAATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCGCATTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGCCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAGCGAACTGAAAACCCTGGGCATGGGCACGGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGATTACGATGTGGTGCGGGTGGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTCGGCACCCAAATGCTGGCCAAAGGCCACCATTTTCCTTAT
GTGACTCTAGTGGCGATTTTGGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGCCGCGGTGAACATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACCCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTGCTG
CCCCCATTTCGCTATACCGCCCTGATTCGCTGTGAATCGAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGCCCGATTCCAGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.585

100

0.738

Multiple sequence alignment