Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   FSC05_RS07885 Genome accession   NZ_CP044450
Coordinates   1646059..1646403 (-) Length   114 a.a.
NCBI ID   WP_252725513.1    Uniprot ID   -
Organism   Acinetobacter indicus strain MMS9-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1641059..1651403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC05_RS07855 (FSC05_07885) tadA 1641289..1641810 (-) 522 WP_163141989.1 tRNA adenosine(34) deaminase TadA -
  FSC05_RS07860 (FSC05_07890) - 1641814..1642938 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  FSC05_RS07865 (FSC05_07895) ung 1642935..1643648 (-) 714 WP_163141992.1 uracil-DNA glycosylase -
  FSC05_RS07870 (FSC05_07900) - 1643690..1644286 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  FSC05_RS07875 (FSC05_07905) gspK 1644434..1645381 (-) 948 WP_163141995.1 type II secretion system minor pseudopilin GspK -
  FSC05_RS07880 (FSC05_07910) xcpW 1645427..1646062 (-) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FSC05_RS07885 (FSC05_07915) xcpV 1646059..1646403 (-) 345 WP_252725513.1 type II secretion system protein GspI Machinery gene
  FSC05_RS07890 (FSC05_07920) - 1646546..1647118 (-) 573 WP_163142001.1 type II secretion system protein -
  FSC05_RS07895 (FSC05_07925) - 1647124..1647738 (-) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  FSC05_RS07900 (FSC05_07930) - 1647799..1648575 (-) 777 WP_163142004.1 TatD family hydrolase -
  FSC05_RS07905 (FSC05_07935) - 1648605..1648946 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  FSC05_RS07910 (FSC05_07940) - 1648958..1649941 (-) 984 WP_005177500.1 DNA polymerase III, delta' subunit -
  FSC05_RS07915 (FSC05_07945) kdsB 1649950..1650714 (-) 765 WP_163142007.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12615.31 Da        Isoelectric Point: 6.2041

>NTDB_id=390085 FSC05_RS07885 WP_252725513.1 1646059..1646403(-) (xcpV) [Acinetobacter indicus strain MMS9-2]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTQQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=390085 FSC05_RS07885 WP_252725513.1 1646059..1646403(-) (xcpV) [Acinetobacter indicus strain MMS9-2]
ATGGTGGCACTGGCGATTTTCGCTACAGCTGCCATGGCACTGACCCAAGTGGCCATGCAATATACCCAGTCCACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GCACGCAATCAAAACAGGTCACCCAGCAAGGTGAAAGCTGGCAAATTGATAAAAGTGCACAGCCCACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGCCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.786

98.246

0.754

Multiple sequence alignment