Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FSC02_RS01600 Genome accession   NZ_CP044445
Coordinates   341309..342169 (-) Length   286 a.a.
NCBI ID   WP_163169931.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336309..347169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS01580 (FSC02_01615) - 338574..338897 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  FSC02_RS01585 (FSC02_01620) rlmB 339003..339755 (+) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FSC02_RS01590 (FSC02_01625) - 339773..340693 (+) 921 WP_016659657.1 DMT family transporter -
  FSC02_RS01595 (FSC02_01630) coaE 340690..341298 (-) 609 WP_005181773.1 dephospho-CoA kinase -
  FSC02_RS01600 (FSC02_01635) pilD 341309..342169 (-) 861 WP_163169931.1 prepilin peptidase Machinery gene
  FSC02_RS01605 (FSC02_01640) pilC 342169..343395 (-) 1227 WP_127801106.1 type II secretion system F family protein Machinery gene
  FSC02_RS01610 (FSC02_01645) pilB 343426..345132 (-) 1707 WP_016659655.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FSC02_RS01615 (FSC02_01650) tpiA 345422..346213 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  FSC02_RS01620 (FSC02_01655) secG 346227..346556 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32020.27 Da        Isoelectric Point: 7.8299

>NTDB_id=390034 FSC02_RS01600 WP_163169931.1 341309..342169(-) (pilD) [Acinetobacter indicus strain CMG3-2]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVAAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=390034 FSC02_RS01600 WP_163169931.1 341309..342169(-) (pilD) [Acinetobacter indicus strain CMG3-2]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATTGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGCCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

55.805

93.357

0.521
  pilD Vibrio campbellii strain DS40M4

53.558

93.357

0.5
  pilD Neisseria gonorrhoeae MS11

48.092

91.608

0.441

Multiple sequence alignment