Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FSC02_RS01150 Genome accession   NZ_CP044445
Coordinates   245454..247022 (-) Length   522 a.a.
NCBI ID   WP_127801560.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 240454..252022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS01135 (FSC02_01160) gpmI 241268..242815 (+) 1548 WP_163169928.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC02_RS01140 (FSC02_01165) - 242839..244008 (+) 1170 WP_104489941.1 S41 family peptidase -
  FSC02_RS01145 (FSC02_01170) pilR 244027..245382 (-) 1356 WP_267313524.1 sigma-54-dependent transcriptional regulator Regulator
  FSC02_RS01150 (FSC02_01175) pilS 245454..247022 (-) 1569 WP_127801560.1 sensor histidine kinase Regulator
  FSC02_RS01155 (FSC02_01180) - 247037..247672 (-) 636 WP_127801561.1 response regulator -
  FSC02_RS01160 (FSC02_01185) - 247890..248972 (+) 1083 WP_127799456.1 serine hydrolase -
  FSC02_RS01165 (FSC02_01190) thrC 249065..250210 (-) 1146 WP_005181581.1 threonine synthase -
  FSC02_RS01170 (FSC02_01195) - 250268..251572 (-) 1305 WP_016659702.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59948.63 Da        Isoelectric Point: 7.1647

>NTDB_id=390031 FSC02_RS01150 WP_127801560.1 245454..247022(-) (pilS) [Acinetobacter indicus strain CMG3-2]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSAPDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLARFIPQLIQDDLADLAS
QIQVSQPEPLQILFDESQLRQVLINLIRNAQRHNAPDHPIELQLYRQQDTVYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=390031 FSC02_RS01150 WP_127801560.1 245454..247022(-) (pilS) [Acinetobacter indicus strain CMG3-2]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCACTGTATAAAGTACAGCCCGACCTGTTTCAATTATTGCAGTTTGACCAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCGCAGCTCAGTCATTTCCTGATCCAGATTCAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGTGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCTTGCTGGCCGGCAGCGCCCCCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATTGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGCGCGTTTTATTCCGCAGCTGATCCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCTCTGCAGATTCTGTTTGATGAATCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCGGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGGACACGGTCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGC
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGCTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

96.743

0.575

Multiple sequence alignment