Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   F7V86_RS19785 Genome accession   NZ_CP044444
Coordinates   3921131..3921898 (-) Length   255 a.a.
NCBI ID   WP_065180879.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3916131..3926898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS19765 - 3916334..3917146 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  F7V86_RS19770 ccpN 3917172..3917810 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  F7V86_RS19775 glyS 3917910..3919949 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  F7V86_RS19780 glyQ 3919942..3920829 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  F7V86_RS19785 recO 3921131..3921898 (-) 768 WP_065180879.1 DNA repair protein RecO Machinery gene
  F7V86_RS19790 - 3921934..3922077 (-) 144 WP_007408286.1 YqzL family protein -
  F7V86_RS19795 era 3922233..3923138 (-) 906 WP_007408285.1 GTPase Era -
  F7V86_RS19800 - 3923119..3923529 (-) 411 WP_017418172.1 cytidine deaminase -
  F7V86_RS19805 - 3923653..3924027 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  F7V86_RS19810 ybeY 3924008..3924481 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  F7V86_RS19815 - 3924482..3926614 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29335.94 Da        Isoelectric Point: 8.5625

>NTDB_id=390017 F7V86_RS19785 WP_065180879.1 3921131..3921898(-) (recO) [Bacillus amyloliquefaciens strain KC41]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFISELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=390017 F7V86_RS19785 WP_065180879.1 3921131..3921898(-) (recO) [Bacillus amyloliquefaciens strain KC41]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCTCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment