Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   F7V86_RS19525 Genome accession   NZ_CP044444
Coordinates   3875175..3876212 (-) Length   345 a.a.
NCBI ID   WP_053284924.1    Uniprot ID   A0AAP4DGT6
Organism   Bacillus amyloliquefaciens strain KC41     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3870175..3881212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS19475 tasA 3870408..3871193 (-) 786 WP_017418136.1 biofilm matrix protein TasA -
  F7V86_RS19480 sipW 3871258..3871842 (-) 585 WP_012117977.1 signal peptidase I SipW -
  F7V86_RS19485 tapA 3871814..3872485 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  F7V86_RS19490 - 3872744..3873073 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  F7V86_RS19495 - 3873114..3873293 (-) 180 WP_003153093.1 YqzE family protein -
  F7V86_RS19500 comGG 3873350..3873727 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  F7V86_RS19505 comGF 3873728..3874123 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  F7V86_RS19510 comGE 3874137..3874451 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  F7V86_RS19515 comGD 3874435..3874872 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  F7V86_RS19520 comGC 3874862..3875170 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  F7V86_RS19525 comGB 3875175..3876212 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  F7V86_RS19530 comGA 3876199..3877269 (-) 1071 WP_106067891.1 competence type IV pilus ATPase ComGA Machinery gene
  F7V86_RS19535 - 3877461..3878411 (-) 951 WP_151140312.1 magnesium transporter CorA family protein -
  F7V86_RS19540 - 3878557..3879858 (+) 1302 WP_070082114.1 hemolysin family protein -
  F7V86_RS19545 - 3879896..3880726 (-) 831 WP_025649847.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39552.87 Da        Isoelectric Point: 9.6787

>NTDB_id=390015 F7V86_RS19525 WP_053284924.1 3875175..3876212(-) (comGB) [Bacillus amyloliquefaciens strain KC41]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATALIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=390015 F7V86_RS19525 WP_053284924.1 3875175..3876212(-) (comGB) [Bacillus amyloliquefaciens strain KC41]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTAAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTGATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGCTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.944

93.623

0.617

Multiple sequence alignment