Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   F7V86_RS18210 Genome accession   NZ_CP044444
Coordinates   3588826..3589434 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3583826..3594434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS18170 - 3584846..3585352 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  F7V86_RS18175 - 3585491..3585904 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  F7V86_RS18180 - 3585934..3586401 (-) 468 WP_017418018.1 YppG family protein -
  F7V86_RS18185 - 3586588..3586770 (+) 183 WP_003153532.1 YppF family protein -
  F7V86_RS18190 - 3586809..3587177 (-) 369 WP_017418019.1 YppE family protein -
  F7V86_RS18195 - 3587223..3587468 (-) 246 WP_014418233.1 DUF5446 family protein -
  F7V86_RS18200 sspM 3587674..3587778 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  F7V86_RS18205 - 3587822..3588784 (-) 963 WP_032864187.1 DUF2515 domain-containing protein -
  F7V86_RS18210 recU 3588826..3589434 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  F7V86_RS18215 - 3589473..3592256 (+) 2784 WP_151140293.1 PBP1A family penicillin-binding protein -
  F7V86_RS18220 - 3592334..3592825 (-) 492 WP_065180548.1 YpoC family protein -
  F7V86_RS18225 nth 3592822..3593481 (-) 660 WP_007612187.1 endonuclease III -
  F7V86_RS18230 dnaD 3593500..3594198 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=390006 F7V86_RS18210 WP_003153521.1 3588826..3589434(+) (recU) [Bacillus amyloliquefaciens strain KC41]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=390006 F7V86_RS18210 WP_003153521.1 3588826..3589434(+) (recU) [Bacillus amyloliquefaciens strain KC41]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment