Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F7V86_RS14620 Genome accession   NZ_CP044444
Coordinates   2795646..2795930 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus amyloliquefaciens strain KC41     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790646..2800930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS14595 - 2791891..2792799 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  F7V86_RS14600 - 2792828..2794060 (-) 1233 WP_007409644.1 aminopeptidase -
  F7V86_RS14605 - 2794161..2794295 (-) 135 WP_003154559.1 protein YkpC -
  F7V86_RS14610 mreBH 2794367..2795374 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  F7V86_RS14620 abrB 2795646..2795930 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F7V86_RS14625 - 2796103..2797407 (+) 1305 WP_014417634.1 ATP-binding protein -
  F7V86_RS14630 - 2797409..2798236 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  F7V86_RS14635 ktrC 2798277..2798942 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  F7V86_RS14640 ade 2799091..2800824 (+) 1734 WP_106067847.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=390000 F7V86_RS14620 WP_014417633.1 2795646..2795930(+) (abrB) [Bacillus amyloliquefaciens strain KC41]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=390000 F7V86_RS14620 WP_014417633.1 2795646..2795930(+) (abrB) [Bacillus amyloliquefaciens strain KC41]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment