Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   F7V86_RS14405 Genome accession   NZ_CP044444
Coordinates   2759284..2759748 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain KC41     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754284..2764748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS14385 - 2754764..2756584 (+) 1821 WP_017417673.1 PAS domain-containing protein -
  F7V86_RS14390 - 2756560..2757779 (-) 1220 Protein_2746 aminotransferase A -
  F7V86_RS20985 - 2757980..2758141 (-) 162 WP_007409608.1 hypothetical protein -
  F7V86_RS14400 cheV 2758330..2759241 (+) 912 WP_025649511.1 chemotaxis protein CheV -
  F7V86_RS14405 kre 2759284..2759748 (-) 465 WP_003154622.1 YkyB family protein Regulator
  F7V86_RS14410 - 2759871..2761163 (-) 1293 WP_014417606.1 MFS transporter -
  F7V86_RS14415 - 2761239..2761733 (-) 495 WP_094296114.1 L,D-transpeptidase family protein -
  F7V86_RS14420 - 2761808..2762671 (-) 864 WP_017417676.1 metallophosphoesterase -
  F7V86_RS14425 fadH 2762815..2763579 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  F7V86_RS14430 - 2763693..2764241 (+) 549 WP_017417677.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=389998 F7V86_RS14405 WP_003154622.1 2759284..2759748(-) (kre) [Bacillus amyloliquefaciens strain KC41]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=389998 F7V86_RS14405 WP_003154622.1 2759284..2759748(-) (kre) [Bacillus amyloliquefaciens strain KC41]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment