Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F7V86_RS09105 Genome accession   NZ_CP044444
Coordinates   1758680..1759633 (+) Length   317 a.a.
NCBI ID   WP_014416904.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753680..1764633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS09080 - 1753725..1755152 (+) 1428 WP_106067998.1 HAMP domain-containing sensor histidine kinase -
  F7V86_RS09085 rapC 1755311..1756459 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  F7V86_RS09090 phrC 1756443..1756562 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  F7V86_RS09095 - 1756712..1756822 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  F7V86_RS09100 - 1756902..1758266 (-) 1365 WP_017419273.1 aspartate kinase -
  F7V86_RS09105 ceuB 1758680..1759633 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  F7V86_RS09110 - 1759623..1760570 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  F7V86_RS09115 - 1760564..1761322 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  F7V86_RS09120 - 1761344..1762288 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  F7V86_RS09125 - 1762330..1763754 (-) 1425 WP_017419270.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=389980 F7V86_RS09105 WP_014416904.1 1758680..1759633(+) (ceuB) [Bacillus amyloliquefaciens strain KC41]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=389980 F7V86_RS09105 WP_014416904.1 1758680..1759633(+) (ceuB) [Bacillus amyloliquefaciens strain KC41]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCAACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTTTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTCTTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539

Multiple sequence alignment