Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   F7V86_RS02080 Genome accession   NZ_CP044444
Coordinates   390680..391324 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus amyloliquefaciens strain KC41     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 385680..396324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS02045 - 386865..387296 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  F7V86_RS02050 - 387296..387637 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  F7V86_RS02055 - 387630..389111 (+) 1482 WP_151140054.1 Na+/H+ antiporter subunit D -
  F7V86_RS02060 - 389117..389593 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  F7V86_RS02065 - 389593..389877 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  F7V86_RS02070 mnhG 389861..390235 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  F7V86_RS02075 - 390275..390658 (-) 384 WP_104842774.1 hotdog fold thioesterase -
  F7V86_RS02080 comA 390680..391324 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  F7V86_RS02085 comP 391405..393711 (-) 2307 WP_065180455.1 sensor histidine kinase Regulator
  F7V86_RS02090 comX 393730..393906 (-) 177 WP_017419424.1 competence pheromone ComX -
  F7V86_RS02095 - 393921..394796 (-) 876 WP_026092320.1 polyprenyl synthetase family protein -
  F7V86_RS02100 degQ 394948..395088 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  F7V86_RS02110 - 395553..395894 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=389954 F7V86_RS02080 WP_014418762.1 390680..391324(-) (comA) [Bacillus amyloliquefaciens strain KC41]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=389954 F7V86_RS02080 WP_014418762.1 390680..391324(-) (comA) [Bacillus amyloliquefaciens strain KC41]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment