Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FY534_RS01380 Genome accession   NZ_CP044434
Coordinates   280993..282366 (+) Length   457 a.a.
NCBI ID   WP_203114954.1    Uniprot ID   -
Organism   Alicyclobacillus sp. TC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275993..287366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY534_RS01370 (FY534_01350) - 276526..278955 (+) 2430 WP_203114953.1 ATP-dependent Clp protease ATP-binding subunit -
  FY534_RS01375 (FY534_01355) ltrA 279411..280826 (+) 1416 WP_203114930.1 group II intron reverse transcriptase/maturase -
  FY534_RS01380 (FY534_01360) radA 280993..282366 (+) 1374 WP_203114954.1 DNA repair protein RadA Machinery gene
  FY534_RS01385 (FY534_01365) disA 282371..283450 (+) 1080 WP_203114955.1 DNA integrity scanning diadenylate cyclase DisA -
  FY534_RS01390 (FY534_01370) pssA 283540..284271 (+) 732 WP_203114956.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  FY534_RS01395 (FY534_01375) - 284529..285647 (+) 1119 WP_203114957.1 PIN/TRAM domain-containing protein -
  FY534_RS01400 (FY534_01380) - 285820..286521 (+) 702 WP_203114958.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FY534_RS01405 (FY534_01385) ispF 286518..286997 (+) 480 WP_072874916.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50050.70 Da        Isoelectric Point: 6.9406

>NTDB_id=389872 FY534_RS01380 WP_203114954.1 280993..282366(+) (radA) [Alicyclobacillus sp. TC]
MVKVKTKFVCRECGTESVKWLGRCPGCGEWNTFDEERMSLPDKRRPQFAAANIGVVRTSIVDIEGHTEERSSCGLRELDF
VLGGGIVPGSLLLFGGDPGIGKSTLLLQIAYHISQQGKRVLYVSGEESAAQIKMRAERLGALAQSLYVLAETDLDIILQQ
VEEMRPEFMIVDSIQTVYLPSLSSAAGSVSQVRECTGLLMRVAKQNRIATCIVGHVTKDGMLAGPRVLEHMVDTVLYFEG
DRHHDQRVVRAVKNRFGSTNELAVFEMRENGLQEVVNPSELFLAERPTKTPGSAVVVALEGSRPLMLEIQALVATSSFGT
PRRLATGADGLRMNMLLAVLERRLDMHLQTSDAYVNIAGGVRCDEPALDLGMAMALVSSHRNRPLPTGDVFLGEIGLTGE
VRRVSKLEQRIKEAERLGFERCIVPRQNGQSVSRRHGSIEVVGVQSVVDALNLAFLG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=389872 FY534_RS01380 WP_203114954.1 280993..282366(+) (radA) [Alicyclobacillus sp. TC]
TTGGTCAAAGTCAAAACAAAGTTTGTCTGTCGCGAATGTGGCACCGAGTCGGTCAAGTGGTTGGGGCGATGTCCGGGTTG
CGGTGAATGGAACACATTCGATGAAGAGCGAATGTCGCTTCCAGATAAGCGTCGGCCGCAATTTGCAGCGGCAAACATTG
GTGTTGTCCGGACATCGATTGTGGATATTGAAGGTCATACGGAAGAACGCTCATCCTGCGGACTGCGCGAATTGGATTTT
GTACTCGGTGGAGGTATCGTACCAGGTTCGTTGCTGCTCTTCGGAGGAGATCCTGGTATAGGTAAATCAACGCTTCTTTT
ACAAATTGCCTATCATATCTCACAGCAGGGGAAGCGAGTGCTTTATGTATCTGGGGAAGAATCTGCGGCACAAATTAAGA
TGCGGGCTGAGCGGCTGGGAGCGTTGGCTCAAAGTCTCTATGTATTGGCTGAAACCGATCTCGATATCATTTTGCAGCAG
GTAGAGGAGATGCGACCAGAGTTCATGATTGTGGACTCTATTCAGACAGTCTATCTACCTTCTCTATCATCAGCAGCTGG
GAGCGTTTCACAAGTCAGGGAGTGTACAGGACTGCTCATGCGAGTAGCCAAACAAAATCGAATAGCAACTTGTATTGTTG
GTCATGTCACTAAGGATGGAATGTTGGCAGGTCCGCGCGTGCTTGAACATATGGTTGACACGGTACTATACTTTGAGGGT
GATCGGCATCATGATCAACGTGTCGTGCGTGCTGTCAAGAATCGTTTTGGTTCCACGAATGAACTGGCAGTATTTGAGAT
GCGGGAAAATGGTTTGCAAGAAGTCGTCAATCCGTCTGAGCTTTTTCTAGCAGAAAGGCCAACCAAGACGCCAGGCTCTG
CCGTGGTTGTTGCATTGGAAGGTAGTCGTCCACTGATGCTGGAAATACAGGCGCTTGTTGCAACGTCCAGTTTTGGGACA
CCGCGTCGTTTGGCGACTGGTGCTGACGGATTGCGAATGAATATGTTACTTGCAGTGTTGGAAAGACGACTGGACATGCA
TTTACAGACATCGGATGCATATGTCAATATAGCTGGCGGTGTTCGGTGTGATGAACCCGCTTTGGATTTGGGAATGGCGA
TGGCTTTGGTTTCAAGTCACCGCAATCGTCCATTGCCTACAGGGGATGTTTTTTTAGGGGAAATTGGTCTGACGGGTGAA
GTACGGCGGGTTTCCAAACTTGAACAGCGCATCAAGGAAGCGGAGCGGCTTGGATTTGAACGCTGCATAGTACCTCGTCA
GAATGGACAGAGCGTATCACGCAGGCATGGAAGCATTGAAGTAGTAGGTGTTCAGTCGGTTGTAGATGCGTTGAATTTAG
CCTTTTTGGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-428)

AAA domain (AAA_25)

(76-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.556

100

0.558
  radA Streptococcus mitis NCTC 12261

50.216

100

0.51
  radA Streptococcus pneumoniae Rx1

50.216

100

0.51
  radA Streptococcus pneumoniae D39

50.216

100

0.51
  radA Streptococcus pneumoniae R6

50.216

100

0.51
  radA Streptococcus pneumoniae TIGR4

50.216

100

0.51
  radA Streptococcus mitis SK321

50.216

100

0.51

Multiple sequence alignment