Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HLB22_RS03615 Genome accession   NZ_CP053101
Coordinates   777701..778783 (+) Length   360 a.a.
NCBI ID   WP_001670292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain EDCC5398     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772701..783783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB22_RS03595 (HLB22_03595) - 773079..774149 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  HLB22_RS03600 (HLB22_03600) - 774467..775522 (+) 1056 WP_000258149.1 MraY family glycosyltransferase -
  HLB22_RS03605 (HLB22_03605) - 775686..776327 (-) 642 WP_000192942.1 YigZ family protein -
  HLB22_RS03610 (HLB22_03610) fakB1 776471..777337 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  HLB22_RS03615 (HLB22_03615) comFA 777701..778783 (+) 1083 WP_001670292.1 DEAD/DEAH box helicase Machinery gene
  HLB22_RS03620 (HLB22_03620) - 778776..779450 (+) 675 WP_001057974.1 ComF family protein -
  HLB22_RS03625 (HLB22_03625) raiA 779511..780083 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  HLB22_RS03630 (HLB22_03630) secA 780498..783029 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  HLB22_RS03635 (HLB22_03635) - 783071..783169 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42010.51 Da        Isoelectric Point: 9.7563

>NTDB_id=389868 HLB22_RS03615 WP_001670292.1 777701..778783(+) (comFA) [Staphylococcus aureus strain EDCC5398]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENVIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=389868 HLB22_RS03615 WP_001670292.1 777701..778783(+) (comFA) [Staphylococcus aureus strain EDCC5398]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCCTATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATGTAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTCAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTTGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTGGTTGTTATCGATGCGCATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369