Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   F3I00_RS09135 Genome accession   NZ_CP044412
Coordinates   1781250..1783061 (+) Length   603 a.a.
NCBI ID   WP_020807071.1    Uniprot ID   A0AAW6XLA0
Organism   Lactobacillus sp. JM1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776250..1788061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3I00_RS09110 (F3I00_09115) - 1776612..1777394 (-) 783 WP_020807067.1 threonine/serine exporter family protein -
  F3I00_RS09115 (F3I00_09120) - 1777417..1778964 (-) 1548 WP_020807068.1 ABC-F family ATP-binding cassette domain-containing protein -
  F3I00_RS09120 (F3I00_09125) - 1778973..1779365 (-) 393 WP_003649972.1 hypothetical protein -
  F3I00_RS09125 (F3I00_09130) - 1779588..1779857 (+) 270 WP_020807069.1 hypothetical protein -
  F3I00_RS09130 (F3I00_09135) - 1779962..1781086 (-) 1125 WP_003649969.1 LCP family protein -
  F3I00_RS09135 (F3I00_09140) pepF 1781250..1783061 (+) 1812 WP_020807071.1 oligoendopeptidase F Regulator
  F3I00_RS09140 (F3I00_09145) - 1783120..1783992 (-) 873 WP_020807072.1 Rpn family recombination-promoting nuclease/putative transposase -
  F3I00_RS09145 (F3I00_09150) - 1784136..1785659 (-) 1524 WP_081275674.1 L-lactate permease -
  F3I00_RS09150 (F3I00_09155) - 1785767..1786558 (-) 792 WP_003649965.1 metal ABC transporter permease -
  F3I00_RS09155 (F3I00_09160) - 1786558..1787217 (-) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69038.92 Da        Isoelectric Point: 4.6562

>NTDB_id=389848 F3I00_RS09135 WP_020807071.1 1781250..1783061(+) (pepF) [Lactobacillus sp. JM1]
MALPTRNEVSDDLKWDLSRVFKNNQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTRADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=389848 F3I00_RS09135 WP_020807071.1 1781250..1783061(+) (pepF) [Lactobacillus sp. JM1]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACAATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTATGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATACTCACTTTTAATTCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGTTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTCCCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGAAGAAGCAAGAAAGGCTCTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTATGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCAC
TTGCTAATAAAGTTGTCCACGGTACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACGGAAATTATGAAACGAGCTGGCGTTGATATGACTAGGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

98.342

0.507

Multiple sequence alignment