Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F3I00_RS01785 Genome accession   NZ_CP044412
Coordinates   363493..364872 (+) Length   459 a.a.
NCBI ID   WP_020807202.1    Uniprot ID   A0AB33CAD2
Organism   Lactobacillus sp. JM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358493..369872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3I00_RS01755 (F3I00_01755) - 359146..359403 (+) 258 WP_020807208.1 hypothetical protein -
  F3I00_RS01760 (F3I00_01760) - 359405..359590 (+) 186 WP_020807207.1 hypothetical protein -
  F3I00_RS01765 (F3I00_01765) - 359609..360286 (+) 678 WP_065169772.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  F3I00_RS01770 (F3I00_01770) - 360396..361331 (+) 936 WP_003649435.1 AAA family ATPase -
  F3I00_RS01775 (F3I00_01775) pepC 361398..362747 (-) 1350 WP_020807204.1 aminopeptidase C -
  F3I00_RS01780 (F3I00_01780) - 362942..363493 (+) 552 WP_003649433.1 dUTP diphosphatase -
  F3I00_RS01785 (F3I00_01785) radA 363493..364872 (+) 1380 WP_020807202.1 DNA repair protein RadA Machinery gene
  F3I00_RS01790 (F3I00_01790) gltX 364954..366453 (+) 1500 WP_003649431.1 glutamate--tRNA ligase -
  F3I00_RS01795 (F3I00_01795) cysS 366547..367959 (+) 1413 WP_020807201.1 cysteine--tRNA ligase -
  F3I00_RS01800 (F3I00_01800) - 367952..368395 (+) 444 WP_003649429.1 Mini-ribonuclease 3 -
  F3I00_RS01805 (F3I00_01805) rlmB 368382..369137 (+) 756 WP_020807200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50113.68 Da        Isoelectric Point: 7.6588

>NTDB_id=389838 F3I00_RS01785 WP_020807202.1 363493..364872(+) (radA) [Lactobacillus sp. JM1]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEAGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKHNLTTELKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=389838 F3I00_RS01785 WP_020807202.1 363493..364872(+) (radA) [Lactobacillus sp. JM1]
ATGGCAAAAGTTAAAACACGTTATAAGTGCCGTAATTGTGGTTATATTTCAGCTTCTTATTTAGGTAGATGCCCTAATTG
CGGTGCCTGGAATCAATTTGAAGAAGAAACGCAAGAAGTAAAAAAAGTATCAACCAAGGCAACTGCTAGTCGCTTAATGA
CTAAAATTGGAAATAATGATCCAGTAAAATTAAATGAAGTAAAAGCTGAAAAAGAAAAAAGAATTGTAACTCCTTTTGAA
GAACTAAATCGAGTTCTAGGAGGCGGAATAGTTCCGGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGTAAGTC
AACTTTGATGCTTCAAATTACCGGTGCTTTAGCTAAAGAGCATAGTGTTTTATATGTTTCAGGAGAAGAGTCGGCTAGTC
AGATAAAGATGCGAGCTGATCGTTTAGGTGTAAGCAACAGCGGAATTTTGCTTTATCCTGAAACCAATATGCAGAATATT
CGTGAACAGATTGATGAAATTAAGCCGGATTTTTTGGTAATCGACTCTATCCAAACAATGAATGAGCCATCTCTTGATTC
GATGGTTGGATCAGCTTCTCAAGTTCGAGAAGTTACGAGTGAGTTAATGAAGATTGCCAAGAATGATCAGATTACTACTT
TTGTTATTGGACATGTGACTAAAGAAGGTGCAATTGCTGGCCCTAAGATTATGGAACATATGGTTGATACTGTCCTTTAC
TTTGAAGGGGATGGCCACCATTCATATCGAATTTTAAGGTCTGTCAAAAATCGTTTTGGTGCAGCTAATGAGATTGGTAT
GTTTGAAATGAAAAATGAAGGACTAACAGAAGTAAATAATCCTTCAGCGATTTTCTTAGACGAACGTTTACCAAATTCTA
CAGGTTCAGCAGTTGTCGTTTCGCTTGAAGGAACAAGGCCACTTCTAGCCGATATTCAAGCTTTGGTAACTCCAACTGCC
TTTGGCTATGCTAAAAGAACTACGTCGGGGTTAGATTTCAATCGTGTAGCCTTATTATTAGCGGTTTTAGAAAAACGTGG
TAACTTAATGTTACAAAATCAAGATGCATTTTTAACGGCAACAGGTGGAATTAAATTAAATGAGCCAGCGATTGACTTGG
CAATTTGTATGGCTGTAGCTTCTAGTTATAAAAATAAAGAAATTTCTTCTACTGATTGTTTTGTAGGCGAAGCTGGCTTA
ACCGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAAGCTGCTAAAGTAGGCTTTAAGCGAATTTTTAT
TCCAAAACATAATTTAACTACTGAGCTTAAGAATAATTCTGAGATTGAAGTAATTGGTGTAGCAAGTTTGCCGCAAGCTT
TAAAACTGGTTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

60.044

99.782

0.599
  radA Streptococcus pneumoniae Rx1

60.044

99.782

0.599
  radA Streptococcus pneumoniae D39

60.044

99.782

0.599
  radA Streptococcus pneumoniae R6

60.044

99.782

0.599
  radA Streptococcus pneumoniae TIGR4

60.044

99.782

0.599
  radA Streptococcus mitis NCTC 12261

60.044

99.782

0.599
  radA Bacillus subtilis subsp. subtilis str. 168

55.702

99.346

0.553

Multiple sequence alignment