Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F6A13_RS12845 | Genome accession | NZ_CP044411 |
| Coordinates | 2452279..2453310 (-) | Length | 343 a.a. |
| NCBI ID | WP_126604360.1 | Uniprot ID | A0A5J6VWQ9 |
| Organism | Acidithiobacillus sp. 'AMD consortium' | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2447279..2458310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6A13_RS12815 (F6A13_12820) | hslV | 2447486..2448025 (+) | 540 | WP_113525989.1 | ATP-dependent protease subunit HslV | - |
| F6A13_RS12820 (F6A13_12825) | hslU | 2448028..2449350 (+) | 1323 | WP_151528346.1 | ATP-dependent protease ATPase subunit HslU | - |
| F6A13_RS12825 (F6A13_12830) | - | 2449375..2449707 (-) | 333 | WP_113525987.1 | hypothetical protein | - |
| F6A13_RS12830 (F6A13_12835) | rpoH | 2449704..2450564 (-) | 861 | WP_113525986.1 | RNA polymerase sigma factor RpoH | - |
| F6A13_RS12835 (F6A13_12840) | ftsX | 2450709..2451614 (-) | 906 | WP_113525985.1 | permease-like cell division protein FtsX | - |
| F6A13_RS12840 (F6A13_12845) | ftsE | 2451611..2452282 (-) | 672 | WP_009568266.1 | cell division ATP-binding protein FtsE | - |
| F6A13_RS12845 (F6A13_12850) | pilA | 2452279..2453310 (-) | 1032 | WP_126604360.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| F6A13_RS12850 (F6A13_12855) | rsmD | 2453433..2454002 (+) | 570 | WP_126604361.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| F6A13_RS12855 (F6A13_12860) | coaD | 2453995..2454519 (+) | 525 | WP_113525982.1 | pantetheine-phosphate adenylyltransferase | - |
| F6A13_RS12860 (F6A13_12865) | - | 2454548..2454799 (+) | 252 | WP_126604362.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| F6A13_RS12865 (F6A13_12870) | - | 2454783..2456762 (-) | 1980 | WP_126604363.1 | dynamin family protein | - |
| F6A13_RS12870 (F6A13_12875) | mutM | 2456779..2457591 (-) | 813 | WP_126604364.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 36787.18 Da Isoelectric Point: 7.3647
>NTDB_id=389830 F6A13_RS12845 WP_126604360.1 2452279..2453310(-) (pilA) [Acidithiobacillus sp. 'AMD consortium']
MVFDWFKRNKSLPAGETFAEEALPPATVATIPEDAPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEDLEALL
LQADLGSAATREVMDSVTERVRRKELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGNDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
MVFDWFKRNKSLPAGETFAEEALPPATVATIPEDAPKGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEDLEALL
LQADLGSAATREVMDSVTERVRRKELTDPAALQAALRESLLDILRPRAQPWSPEKGHSQVLLMVGINGAGKTTTIGKLAA
RWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTTTRARGNDLLIADTAGRLHTQGHLME
ELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE
QVEDLRPFDPESFVDALFAESKS
Nucleotide
Download Length: 1032 bp
>NTDB_id=389830 F6A13_RS12845 WP_126604360.1 2452279..2453310(-) (pilA) [Acidithiobacillus sp. 'AMD consortium']
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGCATTGCCCCCTGCCAC
TGTGGCGACTATCCCGGAAGACGCCCCCAAGGGACTTTTCTCCCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTGATCGATGCGGATCTGCTGGAAGATCTGGAAGCCCTACTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGGGAAGTCATGGACAGCGTCACGGAACGGGTGCGTCGCAAGGAGCTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCGGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAAGCGGAAGGTTTCACGGTAGTGCTTGCTGCTGGCGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCGCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAACGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCATACCCAGGGCCATCTCATGGAA
GAGCTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGACCCGGAGGCGCCGCAGCAGATCTGGCTGGTGCTGGACGCCGG
GACCGGGCAGAACGCCCTCAATCAGGCGCGTCAGTTTCATGATGCGGTGGGGCTGACAGGTATTTGCATCACCAAGCTAG
ATGGCACCGCCAAGGGGGGTGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCTATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTACGCCCCTTTGACCCCGAATCTTTTGTCGATGCCTTATTTGCGGAGTCGAAGTCATGA
ATGGTGTTCGACTGGTTCAAGCGTAACAAAAGCCTCCCTGCGGGGGAAACGTTCGCCGAAGAGGCATTGCCCCCTGCCAC
TGTGGCGACTATCCCGGAAGACGCCCCCAAGGGACTTTTCTCCCGTCTTCGGCAAGGTCTGGCCCGCAGCCGGGAACAAC
TGGCCGGGGGTGTAGGGCGTCTGGTACTTGGTAAAAAGGTGATCGATGCGGATCTGCTGGAAGATCTGGAAGCCCTACTG
CTACAGGCGGATCTCGGCAGCGCCGCAACCCGGGAAGTCATGGACAGCGTCACGGAACGGGTGCGTCGCAAGGAGCTCAC
GGACCCCGCCGCGCTCCAGGCGGCACTGCGCGAGTCGCTTCTGGATATCCTGCGTCCCCGCGCACAACCCTGGTCGCCCG
AGAAGGGGCATTCTCAGGTGTTGCTCATGGTCGGTATCAACGGCGCGGGCAAAACGACCACCATCGGTAAACTGGCGGCA
CGCTGGAAAGCGGAAGGTTTCACGGTAGTGCTTGCTGCTGGCGACACCTTCCGCGCCGCTGCCGTCGAGCAGTTGCAGGG
CTGGGGGAGGCGCGCGCAGGTGCCGGTGGTGGCGCAGGGTACGGGCGCTGACAGCGCCTCCGTGATTTTCGATGCGCTGA
CCACGACCCGCGCGCGTGGCAACGACCTGCTCATCGCCGATACCGCCGGGCGCCTCCATACCCAGGGCCATCTCATGGAA
GAGCTGAAGAAGATCAGGCGGGTTCTCGGCAAACAGGACCCGGAGGCGCCGCAGCAGATCTGGCTGGTGCTGGACGCCGG
GACCGGGCAGAACGCCCTCAATCAGGCGCGTCAGTTTCATGATGCGGTGGGGCTGACAGGTATTTGCATCACCAAGCTAG
ATGGCACCGCCAAGGGGGGTGTGGTGGCGGCCATCGCCAAGGCCCTGCCCATCCCTATTCGCTACATTGGTGTCGGTGAG
CAGGTCGAAGACTTACGCCCCTTTGACCCCGAATCTTTTGTCGATGCCTTATTTGCGGAGTCGAAGTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54.397 |
89.504 |
0.487 |