Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F7O57_RS09310 Genome accession   NZ_CP044403
Coordinates   1917907..1918536 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NMBU-W10C18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912907..1923536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7O57_RS09290 (F7O57_09550) ycbZ 1913297..1915057 (-) 1761 WP_172986632.1 Lon protease family protein -
  F7O57_RS09295 (F7O57_09555) matP 1915243..1915695 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F7O57_RS09300 (F7O57_09560) ompA 1915770..1916822 (-) 1053 WP_172986633.1 porin OmpA -
  F7O57_RS09305 (F7O57_09565) sulA 1917179..1917688 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F7O57_RS09310 (F7O57_09570) sxy/tfoX 1917907..1918536 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F7O57_RS09315 (F7O57_09575) yccS 1918499..1920661 (-) 2163 WP_000875041.1 YccS family putative transporter -
  F7O57_RS09320 (F7O57_09580) yccF 1920671..1921117 (-) 447 WP_001261235.1 YccF domain-containing protein -
  F7O57_RS09325 (F7O57_09585) helD 1921240..1923294 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=389769 F7O57_RS09310 WP_000839153.1 1917907..1918536(+) (sxy/tfoX) [Escherichia coli strain NMBU-W10C18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=389769 F7O57_RS09310 WP_000839153.1 1917907..1918536(+) (sxy/tfoX) [Escherichia coli strain NMBU-W10C18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment