Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F5J09_RS02735 Genome accession   NZ_CP044361
Coordinates   572192..573556 (+) Length   454 a.a.
NCBI ID   WP_003599699.1    Uniprot ID   A0A8E0M3K6
Organism   Lacticaseibacillus paracasei strain TD 062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567192..578556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5J09_RS02710 (F5J09_02840) - 567359..568705 (-) 1347 WP_003603257.1 aminopeptidase C -
  F5J09_RS02715 (F5J09_02845) - 569064..570383 (-) 1320 WP_003603256.1 C1 family peptidase -
  F5J09_RS02720 (F5J09_02850) - 570628..571005 (+) 378 WP_003567260.1 DUF805 domain-containing protein -
  F5J09_RS02725 (F5J09_02855) - 571122..571412 (-) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  F5J09_RS02730 (F5J09_02860) - 571633..572175 (+) 543 WP_003567256.1 dUTP diphosphatase -
  F5J09_RS02735 (F5J09_02865) radA 572192..573556 (+) 1365 WP_003599699.1 DNA repair protein RadA Machinery gene
  F5J09_RS02740 (F5J09_02870) - 573579..574694 (+) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  F5J09_RS02745 (F5J09_02875) - 574997..575884 (+) 888 WP_003603253.1 ABC transporter ATP-binding protein -
  F5J09_RS02750 (F5J09_02880) - 575902..576063 (+) 162 Protein_535 ABC transporter permease -
  F5J09_RS02755 (F5J09_02885) - 576165..577181 (+) 1017 WP_096836371.1 IS30 family transposase -
  F5J09_RS02760 (F5J09_02890) - 577235..577870 (+) 636 Protein_537 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49156.50 Da        Isoelectric Point: 7.4216

>NTDB_id=389714 F5J09_RS02735 WP_003599699.1 572192..573556(+) (radA) [Lacticaseibacillus paracasei strain TD 062]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTATGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=389714 F5J09_RS02735 WP_003599699.1 572192..573556(+) (radA) [Lacticaseibacillus paracasei strain TD 062]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGCCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAACCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTGTCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGGGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTCGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCCCGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.433

99.78

0.683
  radA Streptococcus pneumoniae Rx1

68.433

99.78

0.683
  radA Streptococcus pneumoniae D39

68.433

99.78

0.683
  radA Streptococcus pneumoniae R6

68.433

99.78

0.683
  radA Streptococcus pneumoniae TIGR4

68.433

99.78

0.683
  radA Streptococcus mitis SK321

68.212

99.78

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

64.758

100

0.648

Multiple sequence alignment