Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BACIH_RS07050 Genome accession   NZ_CP044360
Coordinates   1328118..1328402 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain V167     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323118..1333402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS07025 (BACIH_1420) - 1324362..1325270 (+) 909 WP_012117456.1 ketopantoate reductase family protein -
  BACIH_RS07030 (BACIH_1421) - 1325302..1326534 (-) 1233 WP_012117457.1 aminopeptidase -
  BACIH_RS07035 (BACIH_1422) - 1326635..1326769 (-) 135 WP_012117458.1 protein YkpC -
  BACIH_RS07040 (BACIH_1423) mreBH 1326841..1327847 (-) 1007 Protein_1349 cell shape-determining protein MreBH -
  BACIH_RS07050 (BACIH_1426) abrB 1328118..1328402 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BACIH_RS07055 (BACIH_1427) - 1328575..1329879 (+) 1305 WP_007409646.1 ATP-binding protein -
  BACIH_RS07060 (BACIH_1428) - 1329881..1330708 (+) 828 WP_012117459.1 gamma-glutamylcyclotransferase -
  BACIH_RS07065 (BACIH_1429) ktrC 1330749..1331414 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BACIH_RS07070 (BACIH_1430) ade 1331563..1333296 (+) 1734 WP_012117460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=389663 BACIH_RS07050 WP_003154557.1 1328118..1328402(+) (abrB) [Bacillus amyloliquefaciens strain V167]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=389663 BACIH_RS07050 WP_003154557.1 1328118..1328402(+) (abrB) [Bacillus amyloliquefaciens strain V167]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment