Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BACIH_RS06935 Genome accession   NZ_CP044360
Coordinates   1307623..1308219 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain V167     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302623..1313219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS06905 (BACIH_1394) - 1302835..1303290 (+) 456 WP_012117442.1 flavodoxin -
  BACIH_RS06910 (BACIH_1395) dapD 1303372..1304082 (+) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BACIH_RS06915 (BACIH_1396) - 1304153..1305277 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  BACIH_RS06920 (BACIH_1397) - 1305338..1305583 (+) 246 WP_003154596.1 YkuS family protein -
  BACIH_RS06925 (BACIH_1398) - 1305617..1306423 (-) 807 WP_012117445.1 mechanosensitive ion channel family protein -
  BACIH_RS06930 (BACIH_1399) - 1306712..1307170 (+) 459 WP_012117446.1 TlpA disulfide reductase family protein -
  BACIH_RS06935 (BACIH_1400) rok 1307623..1308219 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  BACIH_RS06940 (BACIH_1401) - 1308240..1309232 (-) 993 WP_012117448.1 hypothetical protein -
  BACIH_RS06945 (BACIH_1403) - 1309378..1309981 (+) 604 Protein_1330 molybdenum cofactor guanylyltransferase -
  BACIH_RS06950 (BACIH_1404) - 1310033..1311052 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  BACIH_RS06955 (BACIH_1405) glp 1311070..1312362 (+) 1293 WP_012117450.1 gephyrin-like molybdotransferase Glp -
  BACIH_RS06960 (BACIH_1406) mobB 1312323..1312844 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=389662 BACIH_RS06935 WP_012117447.1 1307623..1308219(+) (rok) [Bacillus amyloliquefaciens strain V167]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=389662 BACIH_RS06935 WP_012117447.1 1307623..1308219(+) (rok) [Bacillus amyloliquefaciens strain V167]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment