Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BACIH_RS06835 Genome accession   NZ_CP044360
Coordinates   1291802..1292266 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain V167     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286802..1297266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS06815 (BACIH_1376) - 1287282..1289102 (+) 1821 WP_023356869.1 PAS domain-containing protein -
  BACIH_RS06820 (BACIH_1377) - 1289083..1290296 (-) 1214 Protein_1305 aminotransferase A -
  BACIH_RS19600 (BACIH_1378) - 1290497..1290658 (-) 162 WP_007409608.1 hypothetical protein -
  BACIH_RS06830 (BACIH_1379) cheV 1290847..1291758 (+) 912 WP_012117435.1 chemotaxis protein CheV -
  BACIH_RS06835 (BACIH_1380) kre 1291802..1292266 (-) 465 WP_003154622.1 YkyB family protein Regulator
  BACIH_RS06840 (BACIH_1381) - 1292389..1293681 (-) 1293 WP_012117436.1 MFS transporter -
  BACIH_RS06845 (BACIH_1382) - 1293757..1294251 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  BACIH_RS06850 (BACIH_1383) - 1294326..1295189 (-) 864 WP_023356871.1 metallophosphoesterase -
  BACIH_RS06855 (BACIH_1384) fadH 1295334..1296098 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  BACIH_RS06860 - 1296263..1296712 (+) 450 Protein_1313 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=389661 BACIH_RS06835 WP_003154622.1 1291802..1292266(-) (kre) [Bacillus amyloliquefaciens strain V167]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=389661 BACIH_RS06835 WP_003154622.1 1291802..1292266(-) (kre) [Bacillus amyloliquefaciens strain V167]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment