Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HK408_RS17760 Genome accession   NZ_CP053079
Coordinates   3674025..3674630 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain K56-43-un     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3669025..3679630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK408_RS17740 (HK408_17765) aes 3669179..3670147 (+) 969 WP_000801820.1 acetyl esterase -
  HK408_RS17745 (HK408_17770) hemH 3670122..3671084 (-) 963 WP_001250114.1 ferrochelatase -
  HK408_RS17750 (HK408_17775) adk 3671216..3671860 (-) 645 WP_001313630.1 adenylate kinase -
  HK408_RS17755 (HK408_17780) htpG 3672041..3673915 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  HK408_RS17760 (HK408_17785) recR 3674025..3674630 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HK408_RS17765 (HK408_17790) ybaB 3674630..3674959 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HK408_RS17770 (HK408_17795) dnaX 3675012..3676943 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HK408_RS17775 (HK408_17800) apt 3677072..3677623 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HK408_RS17780 (HK408_17805) ybaN 3677776..3678153 (-) 378 WP_001188900.1 DUF454 family protein -
  HK408_RS17785 (HK408_17810) priC 3678223..3678750 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  HK408_RS17790 (HK408_17815) rsmS 3678764..3678925 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HK408_RS25240 - 3678978..3679076 (-) 99 Protein_3536 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=389656 HK408_RS17760 WP_001195025.1 3674025..3674630(-) (recR) [Escherichia coli strain K56-43-un]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=389656 HK408_RS17760 WP_001195025.1 3674025..3674630(-) (recR) [Escherichia coli strain K56-43-un]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443