Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HK408_RS09150 Genome accession   NZ_CP053079
Coordinates   1953087..1954514 (-) Length   475 a.a.
NCBI ID   WP_021522136.1    Uniprot ID   -
Organism   Escherichia coli strain K56-43-un     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948087..1959514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK408_RS09115 (HK408_09130) hisL 1948671..1948721 (-) 51 WP_001364200.1 his operon leader peptide -
  HK408_RS09120 (HK408_09135) yefM 1949004..1949255 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HK408_RS09125 (HK408_09140) yoeB 1949252..1949506 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HK408_RS09130 (HK408_09145) yeeZ 1949589..1950413 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HK408_RS09135 (HK408_09150) yeeY 1950459..1951388 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HK408_RS09140 (HK408_09155) yoeI 1951603..1951665 (+) 63 WP_010723108.1 membrane protein YoeI -
  HK408_RS09145 (HK408_09160) plaP 1951655..1953013 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HK408_RS09150 (HK408_09165) sbcB 1953087..1954514 (-) 1428 WP_021522136.1 exodeoxyribonuclease I Machinery gene
  HK408_RS09155 (HK408_09170) dacD 1954723..1955889 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HK408_RS09160 (HK408_09175) sbmC 1956007..1956480 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HK408_RS09165 (HK408_09180) yeeA 1956678..1957736 (+) 1059 WP_001200890.1 FUSC family protein -
  HK408_RS09170 (HK408_09185) tmaR 1957908..1958237 (+) 330 WP_000450409.1 DUF496 family protein -
  HK408_RS25295 (HK408_09190) - 1958338..1958520 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HK408_RS25025 - 1958640..1958720 (+) 81 WP_023441679.1 hypothetical protein -
  HK408_RS09185 (HK408_09200) - 1959009..1959089 (-) 81 Protein_1825 hypothetical protein -
  HK408_RS09190 (HK408_09205) yeeW 1959135..1959329 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=389639 HK408_RS09150 WP_021522136.1 1953087..1954514(-) (sbcB) [Escherichia coli strain K56-43-un]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=389639 HK408_RS09150 WP_021522136.1 1953087..1954514(-) (sbcB) [Escherichia coli strain K56-43-un]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581