Detailed information NTG0389626

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HK408_RS05835
• Genome accession: NZ_CP053079
• Coordinates: 1226433..1227425 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain K56-43-un
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1221433..1232425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK408_RS05805 (HK408_05810)	ispD	1221494..1222204 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HK408_RS05810 (HK408_05815)	ispF	1222204..1222683 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HK408_RS05815 (HK408_05820)	truD	1222680..1223729 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
HK408_RS05820 (HK408_05825)	surE	1223710..1224471 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HK408_RS05825 (HK408_05830)	pcm	1224465..1225091 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HK408_RS05830 (HK408_05835)	nlpD	1225276..1226370 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HK408_RS05835 (HK408_05840)	rpoS	1226433..1227425 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HK408_RS05840 (HK408_05845)	-	1227603..1228154 (-)	552	WP_001179442.1	flavodoxin family protein	-
HK408_RS05845 (HK408_05850)	-	1228379..1229422 (+)	1044	WP_021522209.1	MBL fold metallo-hydrolase	-
HK408_RS05850 (HK408_05855)	ygbN	1229565..1230929 (-)	1365	WP_000104433.1	GntP family transporter	-
HK408_RS05855 (HK408_05860)	ygbM	1231018..1231794 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=389626 HK408_RS05835 WP_000081550.1 1226433..1227425(+) (rpoS) [Escherichia coli strain K56-43-un]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=389626 HK408_RS05835 WP_000081550.1 1226433..1227425(+) (rpoS) [Escherichia coli strain K56-43-un]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715