Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   F6467_RS16860 Genome accession   NZ_CP044349
Coordinates   3391019..3391708 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain LC1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386019..3396708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6467_RS16825 (F6467_16825) fliW 3386110..3386541 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  F6467_RS16830 (F6467_16830) - 3386571..3387140 (-) 570 WP_007407476.1 DUF6470 family protein -
  F6467_RS16835 (F6467_16835) flgL 3387231..3388148 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  F6467_RS16840 (F6467_16840) flgK 3388160..3389677 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  F6467_RS16845 (F6467_16845) - 3389693..3390175 (-) 483 WP_032876168.1 flagellar protein FlgN -
  F6467_RS16850 (F6467_16850) flgM 3390190..3390456 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  F6467_RS16855 (F6467_16855) - 3390526..3390945 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  F6467_RS16860 (F6467_16860) comFC 3391019..3391708 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  F6467_RS16865 (F6467_16865) - 3391714..3391998 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  F6467_RS16870 (F6467_16870) comFA 3392056..3393441 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  F6467_RS16875 (F6467_16875) - 3393550..3394398 (-) 849 WP_032876160.1 DegV family protein -
  F6467_RS16880 (F6467_16880) degU 3394496..3395185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F6467_RS16885 (F6467_16885) degS 3395262..3396425 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=389592 F6467_RS16860 WP_196770545.1 3391019..3391708(-) (comFC) [Bacillus velezensis strain LC1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=389592 F6467_RS16860 WP_196770545.1 3391019..3391708(-) (comFC) [Bacillus velezensis strain LC1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment