Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HHM66_RS08360 Genome accession   NZ_CP053074
Coordinates   1684612..1685220 (+) Length   202 a.a.
NCBI ID   WP_004230533.1    Uniprot ID   A0ABU0A760
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679612..1690220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS08335 (HHM66_08345) - 1680644..1681798 (-) 1155 WP_003056774.1 class I SAM-dependent RNA methyltransferase -
  HHM66_RS08345 (HHM66_08355) gpsB 1682243..1682569 (-) 327 WP_003060950.1 cell division regulator GpsB -
  HHM66_RS08350 (HHM66_08360) - 1682691..1683236 (-) 546 WP_170078225.1 DUF1273 domain-containing protein -
  HHM66_RS08355 (HHM66_08365) - 1683298..1684431 (+) 1134 WP_015057915.1 ISAs1-like element IS1548 family transposase -
  HHM66_RS08360 (HHM66_08370) recU 1684612..1685220 (+) 609 WP_004230533.1 Holliday junction resolvase RecU Machinery gene
  HHM66_RS08365 (HHM66_08375) pbp1a 1685207..1687381 (+) 2175 WP_015057986.1 penicillin-binding protein PBP1A -
  HHM66_RS08370 (HHM66_08380) pepC 1687427..1688758 (-) 1332 WP_015057987.1 aminopeptidase C -
  HHM66_RS08375 (HHM66_08385) nadE 1688939..1689763 (-) 825 WP_015057988.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23362.98 Da        Isoelectric Point: 9.9487

>NTDB_id=389482 HHM66_RS08360 WP_004230533.1 1684612..1685220(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQPSTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=389482 HHM66_RS08360 WP_004230533.1 1684612..1685220(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAACCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5