Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D6T76_RS00460 Genome accession   NZ_CP044335
Coordinates   114962..115588 (+) Length   208 a.a.
NCBI ID   WP_169721710.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain AKB48     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 109962..120588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6T76_RS00440 (D6T76_00445) - 110361..112121 (-) 1761 WP_169721707.1 Lon protease family protein -
  D6T76_RS00445 (D6T76_00450) matP 112308..112760 (+) 453 WP_169721708.1 macrodomain Ter protein MatP -
  D6T76_RS00450 (D6T76_00455) ompA 112826..113878 (-) 1053 WP_169721709.1 porin OmpA -
  D6T76_RS00455 (D6T76_00460) sulA 114235..114744 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  D6T76_RS00460 (D6T76_00465) sxy/tfoX 114962..115588 (+) 627 WP_169721710.1 TfoX/Sxy family DNA transformation protein Regulator
  D6T76_RS00465 (D6T76_00470) yccS 115545..117707 (-) 2163 WP_169721711.1 YccS family putative transporter -
  D6T76_RS00470 (D6T76_00475) - 117726..118172 (-) 447 WP_169721712.1 YccF domain-containing protein -
  D6T76_RS00475 (D6T76_00480) helD 118295..120349 (+) 2055 WP_169721713.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23961.57 Da        Isoelectric Point: 9.2159

>NTDB_id=389481 D6T76_RS00460 WP_169721710.1 114962..115588(+) (sxy/tfoX) [Enterobacter hormaechei strain AKB48]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAAVKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=389481 D6T76_RS00460 WP_169721710.1 114962..115588(+) (sxy/tfoX) [Enterobacter hormaechei strain AKB48]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCGT
GAAAGAGCGCTACCAACGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment