Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHM66_RS01875 Genome accession   NZ_CP053074
Coordinates   352016..353086 (+) Length   356 a.a.
NCBI ID   WP_003057822.1    Uniprot ID   A0A9X9QN92
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 347016..358086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS01860 (HHM66_01865) amiA 347543..349513 (+) 1971 WP_003057820.1 peptide ABC transporter substrate-binding protein Regulator
  HHM66_RS01865 (HHM66_01870) amiC 349579..351081 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  HHM66_RS01870 (HHM66_01875) amiD 351081..352007 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  HHM66_RS01875 (HHM66_01880) amiE 352016..353086 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  HHM66_RS01880 (HHM66_01885) - 353079..354002 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein -
  HHM66_RS01885 (HHM66_01890) - 354030..355016 (-) 987 WP_170078129.1 IS30-like element IS1239 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39607.62 Da        Isoelectric Point: 5.6648

>NTDB_id=389429 HHM66_RS01875 WP_003057822.1 352016..353086(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=389429 HHM66_RS01875 WP_003057822.1 352016..353086(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCGATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGACGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCATTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGATAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCAC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9QN92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.27

94.663

0.542