Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F7D02_RS13080 Genome accession   NZ_CP044315
Coordinates   2539518..2540147 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SJ7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2528440..2551321 2539518..2540147 within 0


Gene organization within MGE regions


Location: 2528440..2551321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D02_RS13020 (F7D02_13405) - 2528440..2529459 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  F7D02_RS13025 (F7D02_13410) yccA 2529867..2530526 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  F7D02_RS13030 (F7D02_13415) tusE 2530617..2530946 (+) 330 WP_000904444.1 sulfurtransferase TusE -
  F7D02_RS13035 (F7D02_13420) yccX 2530943..2531221 (-) 279 WP_000048255.1 acylphosphatase -
  F7D02_RS13040 (F7D02_13425) rlmI 2531316..2532506 (+) 1191 WP_000116292.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  F7D02_RS13045 (F7D02_13430) hspQ 2532564..2532881 (+) 318 WP_001295356.1 heat shock protein HspQ -
  F7D02_RS13050 (F7D02_13435) yccU 2532926..2533339 (-) 414 WP_000665217.1 CoA-binding protein -
  F7D02_RS13055 (F7D02_13440) yccT 2533512..2534174 (+) 663 WP_000847791.1 DUF2057 family protein -
  F7D02_RS13060 (F7D02_13445) mgsA 2534270..2534728 (+) 459 WP_000424181.1 methylglyoxal synthase -
  F7D02_RS13065 (F7D02_13450) helD 2534760..2536814 (-) 2055 WP_000420533.1 DNA helicase IV -
  F7D02_RS13070 (F7D02_13455) yccF 2536937..2537383 (+) 447 WP_001261231.1 YccF domain-containing protein -
  F7D02_RS13075 (F7D02_13460) yccS 2537393..2539555 (+) 2163 WP_000875044.1 YccS family putative transporter -
  F7D02_RS13080 (F7D02_13465) sxy/tfoX 2539518..2540147 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F7D02_RS13085 (F7D02_13470) sulA 2540366..2540875 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F7D02_RS13090 (F7D02_13475) ompA 2541232..2542272 (+) 1041 WP_000750416.1 porin OmpA -
  F7D02_RS13095 (F7D02_13480) matP 2542348..2542800 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F7D02_RS13100 (F7D02_13485) ycbZ 2542986..2544746 (+) 1761 WP_000156526.1 Lon protease family protein -
  F7D02_RS13105 (F7D02_13490) fabA 2544815..2545333 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  F7D02_RS13110 (F7D02_13495) rmf 2545403..2545570 (-) 168 WP_000828648.1 ribosome modulation factor -
  F7D02_RS13115 (F7D02_13500) pqiC 2545826..2546389 (-) 564 WP_000759100.1 membrane integrity-associated transporter subunit PqiC -
  F7D02_RS13120 (F7D02_13505) pqiB 2546386..2548026 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  F7D02_RS13125 (F7D02_13510) pqiA 2548031..2549284 (-) 1254 WP_000333173.1 membrane integrity-associated transporter subunit PqiA -
  F7D02_RS13130 (F7D02_13515) uup 2549414..2551321 (-) 1908 WP_000053079.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=389402 F7D02_RS13080 WP_000839153.1 2539518..2540147(-) (sxy/tfoX) [Escherichia coli strain SJ7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=389402 F7D02_RS13080 WP_000839153.1 2539518..2540147(-) (sxy/tfoX) [Escherichia coli strain SJ7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment