Detailed information NTG0389368

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: F7D04_RS25805
• Genome accession: NZ_CP044313
• Coordinates: 5268041..5268670 (+)
• Length: 209 a.a.
• NCBI ID: WP_000839153.1
• Uniprot ID: A0A9Q6Y251
• Organism: Escherichia coli strain RM11911
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	5268241..5282561	5268041..5268670	flank	-429

Gene organization within MGE regions

Location: 5268041..5282561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D04_RS25805	sxy/tfoX	5268041..5268670 (+)	630	WP_000839153.1	CRP-S regulon transcriptional coactivator Sxy	Regulator
F7D04_RS25810	yccS	5268633..5270795 (-)	2163	WP_072095558.1	YccS family putative transporter	-
F7D04_RS25815	yccF	5270805..5271251 (-)	447	WP_001261235.1	YccF domain-containing protein	-
F7D04_RS25820	helD	5271374..5273428 (+)	2055	WP_000420537.1	DNA helicase IV	-
F7D04_RS25825	mgsA	5273460..5273918 (-)	459	WP_000424181.1	methylglyoxal synthase	-
F7D04_RS25830	yccT	5274014..5274676 (-)	663	WP_000847791.1	DUF2057 family protein	-
F7D04_RS25835	yccU	5274849..5275262 (+)	414	WP_000665217.1	CoA-binding protein	-
F7D04_RS25840	hspQ	5275307..5275624 (-)	318	WP_001295356.1	heat shock protein HspQ	-
F7D04_RS25845	rlmI	5275682..5276872 (-)	1191	WP_000116288.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
F7D04_RS25850	yccX	5276967..5277245 (+)	279	WP_000048252.1	acylphosphatase	-
F7D04_RS25855	tusE	5277242..5277571 (-)	330	WP_000904442.1	sulfurtransferase TusE	-
F7D04_RS25860	yccA	5277662..5278321 (-)	660	WP_000375136.1	FtsH protease modulator YccA	-
F7D04_RS25865	-	5278729..5279748 (-)	1020	WP_072095559.1	tyrosine-type recombinase/integrase	-
F7D04_RS25870	-	5279717..5279968 (-)	252	WP_000273158.1	DUF4224 domain-containing protein	-
F7D04_RS27840	-	5280035..5281786 (-)	1752	WP_346266979.1	3'-5' exoribonuclease	-
F7D04_RS27605	-	5281994..5282500 (-)	507	Protein_5121	RecE family exodeoxyribonuclease	-

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24147.02 Da
• Isoelectric Point: 9.2180

>NTDB_id=389368 F7D04_RS25805 WP_000839153.1 5268041..5268670(+) (sxy/tfoX) [Escherichia coli strain RM11911]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide

• Length: 630 bp

>NTDB_id=389368 F7D04_RS25805 WP_000839153.1 5268041..5268670(+) (sxy/tfoX) [Escherichia coli strain RM11911]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

• TfoX N-terminal domain (TfoX_N) (14-106)

• TfoX C-terminal domain (TfoX_C) (116-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	100	100	1