Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HH313_RS03590 Genome accession   NZ_CP053070
Coordinates   768434..770215 (+) Length   593 a.a.
NCBI ID   WP_000983680.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL20709 isolate HL20709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763434..775215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH313_RS03580 (HH313_000717) ltaS 764328..766268 (+) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  HH313_RS03585 (HH313_000718) - 766539..768422 (+) 1884 WP_000525113.1 ABC-F family ATP-binding cassette domain-containing protein -
  HH313_RS03590 (HH313_000719) recQ 768434..770215 (+) 1782 WP_000983680.1 DNA helicase RecQ Machinery gene
  HH313_RS03595 (HH313_000720) - 770437..771414 (+) 978 WP_000589262.1 ABC transporter ATP-binding protein -
  HH313_RS03600 (HH313_000721) - 771407..772921 (+) 1515 WP_000180997.1 ABC transporter permease/substrate-binding protein -
  HH313_RS03605 (HH313_000722) hisC 773161..774219 (+) 1059 WP_000663039.1 histidinol-phosphate transaminase -
  HH313_RS03610 (HH313_000723) - 774378..774920 (+) 543 WP_000197262.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68156.09 Da        Isoelectric Point: 6.8095

>NTDB_id=389330 HH313_RS03590 WP_000983680.1 768434..770215(+) (recQ) [Staphylococcus aureus strain HL20709 isolate HL20709]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=389330 HH313_RS03590 WP_000983680.1 768434..770215(+) (recQ) [Staphylococcus aureus strain HL20709 isolate HL20709]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTTATATCATTAATGAAAGATCAAGTGGATCAGTTAAAAGCGATGGGAATTCAG
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAACATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTACCAACGTC
AAAAATTTGTATTAGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGGGAAGA
AGCGCAAAATGACTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAT
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGTGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

DEAD/DEAH box helicase (DEAD)

(17-178)

Helicase conserved C-terminal domain (Helicase_C)

(218-320)

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422