Detailed information NTG0389300

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: F7D06_RS03905
• Genome accession: NZ_CP044311
• Coordinates: 835079..835708 (+)
• Length: 209 a.a.
• NCBI ID: WP_000839153.1
• Uniprot ID: A0A9Q6Y251
• Organism: Escherichia coli strain RM13752
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	835279..849599	835079..835708	flank	-429

Gene organization within MGE regions

Location: 835079..849599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7D06_RS03905 (F7D06_03970)	sxy/tfoX	835079..835708 (+)	630	WP_000839153.1	CRP-S regulon transcriptional coactivator Sxy	Regulator
F7D06_RS03910 (F7D06_03975)	yccS	835671..837833 (-)	2163	WP_072095558.1	YccS family putative transporter	-
F7D06_RS03915 (F7D06_03980)	yccF	837843..838289 (-)	447	WP_001261235.1	YccF domain-containing protein	-
F7D06_RS03920 (F7D06_03985)	helD	838412..840466 (+)	2055	WP_000420537.1	DNA helicase IV	-
F7D06_RS03925 (F7D06_03990)	mgsA	840498..840956 (-)	459	WP_000424181.1	methylglyoxal synthase	-
F7D06_RS03930 (F7D06_03995)	yccT	841052..841714 (-)	663	WP_000847791.1	DUF2057 family protein	-
F7D06_RS03935 (F7D06_04000)	yccU	841887..842300 (+)	414	WP_000665217.1	CoA-binding protein	-
F7D06_RS03940 (F7D06_04005)	hspQ	842345..842662 (-)	318	WP_001295356.1	heat shock protein HspQ	-
F7D06_RS03945 (F7D06_04010)	rlmI	842720..843910 (-)	1191	WP_000116288.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
F7D06_RS03950 (F7D06_04015)	yccX	844005..844283 (+)	279	WP_000048252.1	acylphosphatase	-
F7D06_RS03955 (F7D06_04020)	tusE	844280..844609 (-)	330	WP_000904442.1	sulfurtransferase TusE	-
F7D06_RS03960 (F7D06_04025)	yccA	844700..845359 (-)	660	WP_000375136.1	FtsH protease modulator YccA	-
F7D06_RS03965 (F7D06_04030)	-	845767..846786 (-)	1020	WP_072095559.1	tyrosine-type recombinase/integrase	-
F7D06_RS03970 (F7D06_04035)	-	846755..847006 (-)	252	WP_000273158.1	DUF4224 domain-containing protein	-
F7D06_RS26965 (F7D06_04040)	-	847073..848824 (-)	1752	WP_346266979.1	3'-5' exoribonuclease	-
F7D06_RS26570	-	849032..849538 (-)	507	Protein_779	RecE family exodeoxyribonuclease	-

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24147.02 Da
• Isoelectric Point: 9.2180

>NTDB_id=389300 F7D06_RS03905 WP_000839153.1 835079..835708(+) (sxy/tfoX) [Escherichia coli strain RM13752]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide

• Length: 630 bp

>NTDB_id=389300 F7D06_RS03905 WP_000839153.1 835079..835708(+) (sxy/tfoX) [Escherichia coli strain RM13752]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

• TfoX N-terminal domain (TfoX_N) (14-106)

• TfoX C-terminal domain (TfoX_C) (116-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	100	100	1