Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F4V51_RS26945 Genome accession   NZ_CP044310
Coordinates   6039978..6040931 (-) Length   317 a.a.
NCBI ID   WP_153980250.1    Uniprot ID   -
Organism   Paenibacillus xylanilyticus strain W4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6034978..6045931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V51_RS26925 - 6035474..6037057 (-) 1584 WP_153980246.1 spore germination protein -
  F4V51_RS26930 - 6037235..6038221 (-) 987 WP_153980247.1 siderophore ABC transporter substrate-binding protein -
  F4V51_RS26935 - 6038261..6039019 (-) 759 WP_153980248.1 ABC transporter ATP-binding protein -
  F4V51_RS26940 - 6039013..6039975 (-) 963 WP_153980249.1 iron chelate uptake ABC transporter family permease subunit -
  F4V51_RS26945 ceuB 6039978..6040931 (-) 954 WP_153980250.1 ABC transporter permease Machinery gene
  F4V51_RS26950 - 6041174..6041509 (-) 336 WP_153980251.1 hypothetical protein -
  F4V51_RS26955 - 6041565..6042266 (-) 702 WP_153980252.1 pirin family protein -
  F4V51_RS26960 - 6042481..6042891 (-) 411 WP_153980253.1 DoxX family protein -
  F4V51_RS26965 - 6042933..6043793 (-) 861 WP_153980254.1 M56 family metallopeptidase -
  F4V51_RS26970 - 6043795..6044211 (-) 417 WP_095291044.1 BlaI/MecI/CopY family transcriptional regulator -
  F4V51_RS26975 - 6044470..6045930 (-) 1461 WP_153980255.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34877.97 Da        Isoelectric Point: 10.0470

>NTDB_id=389295 F4V51_RS26945 WP_153980250.1 6039978..6040931(-) (ceuB) [Paenibacillus xylanilyticus strain W4]
MKLGYMLIALVVLSFVYIFIGNSDISPLDIFHLTPVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASSLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFATNLGLAYRRVVNLGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIVYPYQLSISLTVGVVGSVLFLYLLLRRKANGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=389295 F4V51_RS26945 WP_153980250.1 6039978..6040931(-) (ceuB) [Paenibacillus xylanilyticus strain W4]
ATGAAGTTAGGTTATATGTTGATCGCACTGGTTGTTCTGTCTTTCGTTTACATATTTATCGGCAACTCGGACATTTCGCC
CCTGGATATATTCCACTTGACCCCAGTGCAGCTGCAGGTACTGCAAGTCAGCCGGTTTCCCCGTCTGATCAGCATTCTGG
TCGCGGGCATCAGTATGAGCGTGATTGGTCTGATTATGCAGCAGCTGACACGCAACCGGTTTGTTTCGCCTACAACAGCA
GGCACCATGGATTCCGCAAGACTTGGAATTCTGGTGACCCTGATGTGGTTCCCTGGCGCGTCCTCTCTGCAAAAAATGCT
GGTTGCCTTCGCCTTTGCCCTGGCAGGTACGCTGATCTTTATGCGAATACTCGAGAAGGTTAAATTCAAGGACACGATCT
ACATCGCTCTTCTGGGCTTGATGTTCGGTAATATCGTTAGTTCGGTGACGACCTTTTTTGCTTACAAAAACGATTTGATC
CAAAACATATCCTCTTGGCTGCAAGGTGACTTCTCCACCATCATGAAGGGCCGATATGAATTGATCTATATCAGTATTCC
GCTGCTGATTATCGTCTATCTCTTCGCCAACCGTTTCACACTGGCGGGGATGGGAGAAGACTTCGCAACCAACCTGGGCC
TGGCATATCGGAGAGTGGTGAACCTCGGATTGATTCTGGTAGCCATGGTCTCGGCTGTAGTCATTATCACCGTAGGCACC
ATTCCGTTTTTGGGTCTGGTCGTACCCAACATTGTGACGCTTTATAAGGGAGATAACTTGCGTGACACGCTGCCCCATAC
GGCCGTACTTGGAGCGATATTCGTTCTGGTCTGTGACATTCTGGGTCAATTGATTGTTTATCCGTACCAGCTGTCCATCA
GTTTGACAGTGGGAGTCGTAGGCAGTGTGCTGTTTCTGTATTTACTGCTTCGAAGAAAGGCAAATGGGTCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.104

97.476

0.508

Multiple sequence alignment