Detailed information NTG0389291

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: F4V51_RS25755
• Genome accession: NZ_CP044310
• Coordinates: 5735109..5736476 (-)
• Length: 455 a.a.
• NCBI ID: WP_095293438.1
• Uniprot ID: -
• Organism: Paenibacillus xylanilyticus strain W4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5730109..5741476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V51_RS25725	ispF	5730170..5730646 (-)	477	WP_153980067.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F4V51_RS25730	ispD	5730643..5731335 (-)	693	WP_153980068.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F4V51_RS25735	-	5731437..5732522 (-)	1086	WP_153980069.1	PIN/TRAM domain-containing protein	-
F4V51_RS25740	-	5732697..5733092 (+)	396	WP_095293446.1	DUF1573 domain-containing protein	-
F4V51_RS25745	pssA	5733226..5733957 (-)	732	WP_153980070.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
F4V51_RS25750	disA	5734019..5735095 (-)	1077	WP_127540919.1	DNA integrity scanning diadenylate cyclase DisA	-
F4V51_RS25755	radA	5735109..5736476 (-)	1368	WP_095293438.1	DNA repair protein RadA	Machinery gene
F4V51_RS25760	clpC	5736703..5739165 (-)	2463	WP_153980071.1	ATP-dependent protease ATP-binding subunit ClpC	-
F4V51_RS25765	-	5739354..5740424 (-)	1071	WP_153980072.1	protein arginine kinase	-
F4V51_RS25770	-	5740453..5740971 (-)	519	WP_153980073.1	UvrB/UvrC motif-containing protein	-
F4V51_RS25775	-	5741004..5741465 (-)	462	WP_095293442.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49641.21 Da
• Isoelectric Point: 6.7188

>NTDB_id=389291 F4V51_RS25755 WP_095293438.1 5735109..5736476(-) (radA) [Paenibacillus xylanilyticus strain W4]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLDALSPELYVLCETNMERVEEA
VEQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPMLVELQALISATHFPS
PRRMATGIDHHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAEKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide

• Length: 1368 bp

>NTDB_id=389291 F4V51_RS25755 WP_095293438.1 5735109..5736476(-) (radA) [Paenibacillus xylanilyticus strain W4]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGTGGTTATGAAGCCCCCAAGTGGTACGGCAAATGTCCGGGGTG
TCAGTCATGGAATTCCATGGTGGAAGAAACGGAAACGGTTGTCAAAACACAAGGGAGAAATTCCCCCCTCTTTGACAGTA
AAGATAAACCGCTTCCCATCATAGATATAGATAGCGGTCAGGAACCGCGTGTGCAGACTGGAATTGGAGAGCTGAACCGG
GTATTGGGTGGAGGAATTGTTCCGGGTTCTCTCGTGCTGGTAGGCGGAGATCCGGGAATCGGAAAATCAACGCTGATGCT
GCAAACCTCGCATGCTCTAACGCATTCGGGTTTGCGCGTGTTATATGTTTCGGGTGAGGAATCGGTGAAACAGACCAAAT
TGCGGGCTGACCGTCTGGATGCACTCTCTCCTGAACTGTATGTGCTGTGTGAAACGAATATGGAACGTGTAGAGGAAGCG
GTGGAGCAGATCCAGCCGCATTTTCTTGTCATCGACTCTATTCAGACGGTATATCTCCCAGAAGTCACCAGTGCACCCGG
CAGCGTAGCACAGGTAAGGGAATGTACTTCTCGGTTTATGCGGATTGCGAAAGGCCGAGGCATTGCAACCGTGCTTGTGG
GGCATGTTACGAAAGAAGGAGCTATCGCTGGTCCGCGTATGCTGGAACATATGGTGGACTGTGTTCTTTATTTTGAAGGG
GAACGTCATCATACGTATAGACTGTTACGTGCGGTTAAAAACCGTTTCGGTTCAACCAATGAAATTGGTATTTTCGAAAT
GGGCGAAGATGGCTTGCGTGAAGTGGGCAATCCTTCCGAACTTTTTTTGTCGGAACGACCGCTCGGTGTAGCGGGTTCTA
CGGTAGTTGCAAGTATGGAAGGCACTAGACCGATGCTGGTTGAGCTGCAGGCGCTCATCTCTGCGACACATTTCCCGTCT
CCCCGCCGTATGGCAACAGGGATAGATCATCACAGGCTGAACCTGATTATTGCCGTGCTTGAGAAGCGGATGGGCATGTT
TTTGCAAACGCAGGATGCGTACCTGAATGTAGCTGGGGGAGTTCGGCTCGATGAACCGGCGGTGGATTTGGCGGTTGCCG
TCAGCATAGCATCCAGTCTGAGGGATGTGCCGACCAAGCCAGATGACGTAATATTTGGCGAAATTGGTTTGACAGGTGAG
GTTCGGGCCGTATCACGGGCTGAACAACGTGTGAAGGAAGCCGAGAAGCTGGGCTTCAAACGAGTCATTTTACCGGAGAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAATTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (76-220)

• Subunit ChlI of Mg-chelatase (ChlI) (348-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.502	100	0.659
radA	Streptococcus pneumoniae Rx1	59.111	98.901	0.585
radA	Streptococcus pneumoniae D39	59.111	98.901	0.585
radA	Streptococcus pneumoniae R6	59.111	98.901	0.585
radA	Streptococcus pneumoniae TIGR4	59.111	98.901	0.585
radA	Streptococcus mitis NCTC 12261	59.111	98.901	0.585
radA	Streptococcus mitis SK321	59.111	98.901	0.585