Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F6X24_RS02395 Genome accession   NZ_CP044285
Coordinates   574553..575953 (+) Length   466 a.a.
NCBI ID   WP_151086283.1    Uniprot ID   -
Organism   Hymenobacter baengnokdamensis strain BRD72     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 569553..580953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X24_RS02375 - 570895..571596 (+) 702 WP_151086278.1 hypothetical protein -
  F6X24_RS02380 - 571601..573103 (-) 1503 WP_151086280.1 helix-turn-helix domain-containing protein -
  F6X24_RS02385 - 573433..573819 (+) 387 WP_191906309.1 transposase -
  F6X24_RS02390 - 573765..574382 (+) 618 WP_191906310.1 IS630 family transposase -
  F6X24_RS02395 radA 574553..575953 (+) 1401 WP_151086283.1 DNA repair protein RadA Machinery gene
  F6X24_RS02400 - 576204..577778 (+) 1575 WP_151086285.1 redoxin domain-containing protein -
  F6X24_RS02405 - 577859..578881 (+) 1023 WP_151086287.1 SPASM domain-containing protein -
  F6X24_RS02410 - 579020..579361 (-) 342 WP_151086288.1 hypothetical protein -
  F6X24_RS18835 - 579477..579668 (-) 192 WP_191906424.1 FeoB-associated Cys-rich membrane protein -
  F6X24_RS02420 - 579749..580567 (-) 819 WP_151086290.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50524.86 Da        Isoelectric Point: 6.1849

>NTDB_id=389246 F6X24_RS02395 WP_151086283.1 574553..575953(+) (radA) [Hymenobacter baengnokdamensis strain BRD72]
MAKARTVYFCQSCGAQSAKWIGRCPSCGEWNTYVEEVIQKETVATTTGQWKPASTVPGGNLNKAARSRPLADIQHEEEPR
ILTPDGELNRVLGGGLVPGSIVLIGGEPGIGKSTLMLQIALMMKQLRILYVSGEESEAQIKMRAERLADGQHANCYILTE
TNTQNIFRQVDQVQPNLLVIDSIQTMHSTLVESGAGSVSQVRECTAEFLKYAKETGVPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRAESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDSKRLQMLLAVLEKRAGLRLGQHDVFLNIAGGLRLDDPALDAAVCAAVVSSLNDLPIPGDVCL
AAEVGLSGEMRAVPRLDQRLAEAEKLGFREMYVSQFNGKNLADQDRAGLRIQAVSRLDEVLQGLFG

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=389246 F6X24_RS02395 WP_151086283.1 574553..575953(+) (radA) [Hymenobacter baengnokdamensis strain BRD72]
ATGGCGAAGGCAAGAACCGTTTATTTCTGTCAGAGCTGCGGGGCGCAGTCGGCCAAGTGGATAGGGCGTTGCCCTTCGTG
CGGCGAGTGGAACACCTACGTTGAAGAAGTTATTCAGAAGGAAACCGTGGCCACCACTACCGGCCAGTGGAAGCCCGCCA
GCACCGTGCCCGGCGGCAACCTCAACAAAGCAGCCAGGTCGCGCCCCCTGGCTGATATTCAGCACGAAGAAGAGCCGCGC
ATTCTCACGCCCGACGGCGAGCTGAACCGCGTGCTGGGTGGTGGCCTCGTGCCGGGCTCCATTGTGCTCATTGGCGGCGA
GCCAGGCATTGGCAAAAGTACGCTTATGCTTCAGATTGCCCTGATGATGAAGCAGCTACGTATTCTGTACGTGAGCGGCG
AAGAAAGCGAGGCCCAGATAAAGATGCGGGCCGAGCGCCTGGCCGACGGCCAACACGCCAATTGCTACATATTAACTGAA
ACCAATACGCAGAATATTTTCCGGCAGGTAGACCAGGTGCAGCCCAACCTGCTCGTCATCGACTCTATCCAGACCATGCA
TTCGACGCTCGTGGAGAGCGGCGCGGGCTCGGTGAGCCAGGTGCGCGAGTGCACGGCCGAGTTTCTGAAATACGCCAAGG
AAACCGGCGTGCCGGTGCTGCTCATCGGGCACATTACCAAGGATGGCAGCATTGCGGGCCCCAAGATTTTGGAGCACATG
GTCGATACCGTGCTGCAGTTTGAGGGCGACCGGCACCTGAGCTACCGCATTTTGCGCACCACCAAAAACCGCTTTGGCAG
CACTTCGGAGCTAGGCATTTACGAGATGCAGGGCACCGGCCTGCGGCAGGTGTCGAACCCGTCTGAGATTCTGCTTTCGC
AACGCGCCGAAAGCCTGAGCGGCATGGCTATCGGGGCTACGCTGGAGGGCAACCGCCCGCTGCTGGTAGAAGTGCAGGCG
CTCGTGACACCTGCCACCTACGGCACGCCCCAGCGTAGCAGCACGGGCTTCGACAGCAAGCGTCTGCAAATGCTGCTGGC
CGTGCTCGAAAAACGCGCCGGCCTGCGCCTCGGCCAGCACGACGTGTTTCTGAACATCGCCGGTGGCCTGCGCCTCGACG
ACCCGGCGCTCGATGCGGCCGTGTGCGCCGCCGTGGTGTCATCGCTCAACGACCTGCCCATTCCCGGCGATGTGTGCCTG
GCCGCCGAAGTTGGTCTCAGCGGGGAGATGCGCGCCGTGCCCCGCCTCGACCAGCGCCTGGCCGAAGCCGAGAAGCTGGG
CTTCCGCGAAATGTACGTGTCGCAGTTCAACGGCAAGAACCTGGCCGACCAGGACCGCGCGGGTCTGCGCATTCAGGCAG
TGAGCCGGCTCGATGAAGTGCTGCAAGGCCTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-463)

AAA domain (AAA_25)

(80-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

47.881

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

47.974

100

0.483
  radA Streptococcus pneumoniae D39

47.458

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.458

100

0.481
  radA Streptococcus pneumoniae R6

47.458

100

0.481
  radA Streptococcus pneumoniae Rx1

47.458

100

0.481
  radA Streptococcus mitis NCTC 12261

47.234

100

0.476

Multiple sequence alignment